1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaaagtgttgctatgcaacattctgtattcctgtgccactatgaactgtaaagtaaaactgctgaacctactcccagagccccctagaagaccagtttttgtactgatattccaaacattttcagATGATTGAAGGATGTCTCCCTTTTTATGACAAGAAAAATAATGAAATTGAGAAGGCACATAATTCTAAAGAAAGGCCACCTTTCAGAGCTCCTCCAAAGC
species | Oryza sativa |
transcript | LOC_Os01g54480.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AATATGATACTAAAGTGGATGTCTTCTCATTTGCTTTGATACTTCAAGAG ATGATTGAAGGATGTCTCCCTTTTTATGACAAGAAAAATAATGAAATTGAGEST: gi|86495208|gb|CI137841.1|CI137841
genomic: AATATGATACTAAAGTGGATGTCTTCTCATTTGCTTTGATACTTCAAGAGgtaaaagtgt ... acattttcagATGATTGAAGGATGTCTCCCTTTTTATGACAAGAAAAATAATGAAATTGAG
EST: AATATGATACTAAAGTGGATGTCTTCTCATTTGCTTTGATACTTCAAGAG ATGATTGAAGGATGTCTCCCTTTTTATGACAAGAAAAATAATGAAATTGAGEST: gi|86498118|gb|CI140751.1|CI140751
genomic: AATATGATACTAAAGTGGATGTCTTCTCATTTGCTTTGATACTTCAAGAGgtaaaagtgt ... acattttcagATGATTGAAGGATGTCTCCCTTTTTATGACAAGAAAAATAATGAAATTGAG
EST: AATATGATACTAAAGTGGATGTCTTCTCATTTGCTTTGATACTTCAAGAG ATGATTGAAGGATGTCTCCCTTTTTATGACAAGAAAAATAATGAAATTGAGEST: gi|88975291|gb|CI023542.1|CI023542
genomic: AATATGATACTAAAGTGGATGTCTTCTCATTTGCTTTGATACTTCAAGAGgtaaaagtgt ... acattttcagATGATTGAAGGATGTCTCCCTTTTTATGACAAGAAAAATAATGAAATTGAG
EST: CTCATTTGCTTTGATACTTCAAGAG ATGATTGAAGGATGTCTCCCTTTTTATGACAAGAAAAATAATGAAATTGAG
genomic: CTCATTTGCTTTGATACTTCAAGAGgtaaaagtgt ... acattttcagATGATTGAAGGATGTCTCCCTTTTTATGACAAGAAAAATAATGAAATTGAG
ctcccagagccccctagaagaccagtttttgtactgatattccaaacattttcagATGATTGAAGGATGTCTCCCTTTTTATGACAAGAAAAATAATGAAATTGAGAAGGCACATAATTCTAAAGAAAGGCCACCTTTCAGAGCTCCTCCAAAGC
tactgat putative branch site (score: 2)
cattttc putative PPT
aaacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaagtgttgctatgcaacattctgtattcctgtgccactatgaactgtaaagtaaaactgctgaacctactcccagagccccctagaagaccagtttttgtactgatattccaaacattttcagATGATTGAAGGATGTCTCCCTTTTTATGACAAGAAAAATAATGAAATTGAGAAGGCACATAATTCTAAAGAAAGGCCACCTTTCAGAGCTCCTCCAAAGC
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