Sequence
atgc intronic sequence ATGC exonic sequencegtaagttttctaggttcagcataagcaattgaacatatatgcccattataacttacgggcttagaattattttgccatcccaagttgcagtgtttttcactggctttattgaagttttagtatattttacttgctattttgactccaaaagttttgaactaatttagttttaacaatgcagATGTTGAGTGCACTAAAGAATTGTCGTAACTCAATGTATATGGGGAGCCTGAAAGACTGCATTGACCCTAATCTAATGGACCTGTATCCACATGACTGTG
Basic information
species | Oryza sativa |
transcript | LOC_Os01g53840.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g53840.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G159105_T01 (Zea mays), 3'ss of exon 8
gtaagttttctaggttcagcataagcaattgaacatatatgcccattataacttacgggcttagaattattttgccatcccaagttgca--gtgtttttcactggctttattgaagttttagtatattttacttgctattttgactccaaaagttttgaactaatttagtttta-acaatgcagATGTTGAGTGCACTAAAGAATTGTCGTAACTCAATGTATATGGGGAGCCTGAAAGACTGCATTGACCCTAATCTAATGGACCTGTATCCACATGACTGTG
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gtaagtttcc--agttcagtg---gtagttgactttct---catgttgtacctttaggctttaccattattttaacattg-aagtagcatagaacttctgttgaactttgttcaatttcctattcatttg--tttttattt--actccaaaagtcttaagcaactttggttatgtactccgcagATGTTAGCTGCCGTAAGGAAATGTCCTAATTCAACGTATATGGGGAACCTGAAAGACTGCATTGACCATAATCTAAGGGATCTGTATCCTTATGACTGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|3763556|gb|AU030308.1|AU030308EST: ACTCAGAAAGGCGTTCCTTGGCATCAGTT ATGTTGAGTGCACTAAAGAATTGTCGTAACTCAATGTATATGGGGAGCCTG
genomic: ACTCAGAAAGGCGTTCCTTGGCATCAGTTgtaagttttc ... aacaatgcagATGTTGAGTGCACTAAAGAATTGTCGTAACTCAATGTATATGGGGAGCCTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttacttgctattttgactccaaaagttttgaactaatttagttttaacaatgcagATGTTGAGTGCACTAAAGAATTGTCGTAACTCAATGTATATGGGGAGCCTGAAAGACTGCATTGACCCTAATCTAATGGACCTGTATCCACATGACTGTG
ttttaac putative branch site (score: 2)
aaaagttttgaactaa TA-rich tract