Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttgttactcgtgatcacttacccattgctacctagtttgattgtgtttgaactagttttctaagttttaccatgttacttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAATTCATCATTGATTTAAGAGGATTTAAG

Basic information

species Oryza sativa
transcript LOC_Os01g51410.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g51410.2 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G104310_T02 (Zea mays), 3'ss of exon 8
gtatatttgttactcgtgatcacttacccattgctacctagtttgattgtgtttgaactagttttctaagttttacc-----atgttacttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAATTCATCATTGATTTAAGAGGATTTAAG
   || |   |  ||  ||   | ||||  |||    |   | | |   |     || |||| ||||||   ||||      ||| |  |  | |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| | |||||||
--gtactacattttcacgacagcatacc--ttggcggcatttgttacattcgccaaattagtcttctaaaacttacttggtaatggtcttcttgcagAAACACTACCCAGTTCTGTTCCGTGGAGTCAACGGAACTGTTGCCCATGAATTCATCATTGATCTAAGGGCATTTAAG

upper sequence: LOC_Os01g51410.2 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G098568_T01 (Zea mays), 3'ss of exon 3
gtatatttgttactcgtgatcacttac-ccattgctacctagtttgattgtgtttgaactagttttctaagttttacc-----atgttacttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCAT-GAATTCATCATTGATTTAAGAGGAT---TTAAG------------------
   || |   |  || |||  |   |  |||| | | | |  | | |   |  |  || |||||||||||  |||||      ||| |  |  | |||||||||||||||||||| ||||||||||||||  ||||| ||  || | |||   | | |      |    | |   || ||                  
--gtactaccttttcatgacaatacataccatagttgcatt-tgttacattcatcaaattagttttctaaaatttacttggtaatgatcttcttgcagAAACACTACCCAGTTCTGTTCCGTGGAGTCAACCGAACTATTTTCCGTTGAAAATACCGTCACCACAGTCTGCTATCTTCAGTTTTAGTTTCACTTTAGT

upper sequence: LOC_Os01g51410.2 (Oryza sativa), 3'ss of exon 9
lower sequence: GLYMA04G05420.1 (Glycine max), 3'ss of exon 10
gtatatttgttactcgtgatcacttacccattgctacctagtttgattgtgtttgaactagttttctaagttttaccatgttacttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAATTCATCATTGATTTAAGAGGATTTAAG
             | |||     | |   |||| |  || || |     |  || | || |     | | || |||  | | | || ||||||| || ||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||| ||||||
-----------gtttgtgcaacgtcatagattgattgcttgtgt-----ttctttaccttgcaactttacttatact-tctaagttttacagAATCATTACCCTGTTCTTTTCCGTGGGGTCAATGGAACAGTTGCTCATGAATTCATTATTGACTTAAGAGGCTTTAAG

upper sequence: LOC_Os01g51410.2 (Oryza sativa), 3'ss of exon 9
lower sequence: GLYMA17G34690.1 (Glycine max), 3'ss of exon 10
-------------------gtatatttgttactcgtgatcacttacccattgctacc-tagtttgattgtgtttgaac-tagttttctaagttttaccatgttacttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAATTCATCATTGATTTAAGAGGATTTAAG
                    || ||   || ||    | |  ||   | | | ||   |  |   | |||| ||     ||   | ||  |||| ||  ||  |||  |||||||  | || || |||||||||||||||||||||||||| ||||| |||||||||||||||||  | ||||| ||||||
gtttgtctcattttatagattacatgcatttctttcaacctttttttcctagttagtatcataatactgtgattctgtatatgatccttggtttaactttg--actcctacagAATTATTATCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAATTCATCATTGACCTGAGAGGCTTTAAG

upper sequence: LOC_Os01g51410.2 (Oryza sativa), 3'ss of exon 9
lower sequence: GLYMA17G34480.1 (Glycine max), 3'ss of exon 5
-----------gtatatttgttactcgtgatcactt--acccattgctacctagtttg---------attgtgtttgaac-tagttttctaagttttaccatgttacttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAATTCATCATTGATTTAAGAGGATTTAAG
            | |||   ||||  |   |   ||  |||  ||  | ||||||| |         | |||| ||     ||   | ||  |||| ||  ||  |||  |||||||  | ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||  | ||||| ||||||
gttttgtctcattttatagattacatgcatttctttcaaccttttttttcctagttagtatcataatactgtgattctgtatatgatccttggtttaactttg--actcctacagaattattaccccgttcttttccgtggagtcaatggaacagttgctcatgaattcatcattgacctgagAGGCTTTAAG

upper sequence: LOC_Os01g51410.2 (Oryza sativa), 3'ss of exon 9
lower sequence: GLYMA14G10820.1 (Glycine max), 3'ss of exon 10
----------gtatatttgttactcgtgatcactt--acccattg--ctacctagtttgattgtgtt-tgaactagttt-----tctaagttttaccatgttacttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAATTCATCATTGATTTAAGAGGATTTAAG
           | |||   ||||  ||      ||  |||  ||   |||  |||| | ||  |  | ||||   || |      ||  |||||||  ||  |||  |||||||  | ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||| ||||||
gtttgtcccattttatagattacatgtatctctttcaacctttttttctagttagtatcataatactgtgaatctgtgtatgatccttggttttactttg--actcctacagAATTATTACCCGGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAATTCATCATTGACTTGAGAGGCTTTAAG

upper sequence: LOC_Os01g51410.2 (Oryza sativa), 3'ss of exon 9
lower sequence: GLYMA06G05470.1 (Glycine max), 3'ss of exon 11
gtatatttgttactcgtgatcacttacccattgctacctagtttgattgtgtttgaactagttttctaagttttaccatgttacttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAATTCATCATTGATTTAAGAGGATTTAAG
             | |||     | |   |||| |  || || |     |  || |||| |     | | || |||  | | | || ||||||| || ||||| |||||||||||||| ||||||||||| ||||| ||||| |||||  |||| |||||||| ||||||
-----------gtttgtgcaatgtcatagattgattgcttgtgt-----ttctttaacttgcaactttacttatact-tctaagttttacagAATCATTACCCTGTTCTTTTCCGTGGGGTCAATGGAACAGTTGCTCATGAGTTCATTGTTGACTTAAGAGGCTTTAAG

upper sequence: LOC_Os01g51410.2 (Oryza sativa), 3'ss of exon 9
lower sequence: AT2G26080.1 (Arabidopsis thaliana), 3'ss of exon 10
gtatatttgttactcgtgatcacttacccattgctacctagtttgattgtgtttgaactagttttctaagttttaccatgttacttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAATTCATCATTGATTTAAGAGGATTTAAG
|||  ||   |  || |||  |||     |  |  |   |   |   |    |||  | |     || | || | |  | ||   | | ||||  ||||||||||||||||||||||| ||||||||||| || || || |||||||||||||| || |||||||| |||
gtaccttatcttatcttgacaactc-tttaaagagagtgaacgtctcttctcttgtgcaa----cctcacttatgctttcttgtct-ttcagAGCCACTACCCAGTTCTTTTCCGTGGTGTCAATGGAACAGTCGCTCACGAATTCATCATTGACTTGAGAGGATTCAAG

upper sequence: LOC_Os01g51410.2 (Oryza sativa), 3'ss of exon 9
lower sequence: AT4G33010.1 (Arabidopsis thaliana), 3'ss of exon 9
gtatatttgttactcgtgatcacttacccattgctacctagtttgattgtgtttgaactagttttctaagttttaccatg--ttacttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAATTCATCATTGATTTAAGAGGATTTAAG
   || | |    || |  ||   ||   |   |||   |  ||  ||| |  ||||  ||   ||||| |||   | ||  ||  || ||||||||||||||||||||||||||||||| || || ||||| || || || ||||||||||| || || ||||| || |||
--gtagtagaacatctttgtcttctatttac--ctattcatctt--ttgagaatgaa--aggagtctaattttcctcttgatttgtttttacagAAACACTACCCAGTTCTTTTCCGTGGTGTTAACGGAACAGTAGCACACGAATTCATCATAGACTTGAGAGGCTTCAAG

upper sequence: LOC_Os01g51410.2 (Oryza sativa), 3'ss of exon 9
lower sequence: Vv11s0016g02280.t01 (Vitis vinifera), 3'ss of exon 11
gtatatttgttactcgtgatcacttacccattgctacctagtttgattgtgtttga--actagttttctaa-gttttaccatgt-tact-tg-----tacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAATTCATCATTGATTTAAGAGGATTTAAG
  | | ||   ||  |  |  |  |   ||  | |       || |  | ||  ||  |  || || ||   || | || || | |||| ||     ||||| | || |||||| | |||||||||||  ||||||| || ||||||||||||||||| ||||||||||| || || |||
--aaaattcccacatgaaaataagtttgcaaggattttcttcttcacggagtgggagaataagattgcttttgtctgactatatatactgtgggtgttacagGACCATTACCCAATCCTTTTCCGTGGCATCAATGGCACGGTTGCCCATGAATTCATAATTGATTTAAGGGGCTTCAAG

upper sequence: LOC_Os01g51410.2 (Oryza sativa), 3'ss of exon 9
lower sequence: Vv04s0008g01300.t01 (Vitis vinifera), 3'ss of exon 10
---------------------------------gtatatttgttactc-gtgatcact----tacccattgctacctag----tttgattgtgtttg-aactagttttctaagttt----taccatgttac-ttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAATTCATCATTGATTTAAGAGGATTTAAG
                                  | |||  |||| |  |  ||||      ||  ||| |  || |       | |||| | |||| |||   ||   |  ||||    |      || | ||   ||||| ||||| ||  ||||||||||||| ||||||||||| |||||||||||||||||  |||| || ||||| || |||
gtccctgcttcttccttgaatatcttcccttggttttatcagttaataagaaatcagggcagtaggcatagggacttgaaattctagattatttttgtaaccttttcattgtgtttgtgtttttgctttgcgttcctcagAAGCACTATCCCATTCTTTTCCGTGGCGTCAATGGAACAGTTGCCCATGAATTCATTGTTGACTTGAGAGGCTTCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29667213|gb|CB663488.1|CB663488
EST:     GAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
genomic: GAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|29625354|gb|CB630365.1|CB630365
EST:     CAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAG
genomic: CAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|88595189|gb|CI715345.1|CI715345
EST:     CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCACTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
genomic: CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|29626748|gb|CB631759.1|CB631759
EST:     CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAG
genomic: CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|29676031|gb|CB672306.1|CB672306
EST:     CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
genomic: CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|29674777|gb|CB671052.1|CB671052
EST:     CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
genomic: CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|29684543|gb|CB680818.1|CB680818
EST:     AAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
genomic: AAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|33381817|gb|CF197160.1|CF197160
EST:     CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAG
genomic: CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|88672014|gb|CI726130.1|CI726130
EST:     CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
genomic: CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|29627963|gb|CB632974.1|CB632974
EST:     CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAG
genomic: CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|29671149|gb|CB667424.1|CB667424
EST:     CTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
genomic: CTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|29668611|gb|CB664886.1|CB664886
EST:     CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
genomic: CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|29656187|gb|CB652462.1|CB652462
EST:     AAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
genomic: AAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|88673152|gb|CI727266.1|CI727266
EST:     CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
genomic: CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|29674787|gb|CB671062.1|CB671062
EST:     AAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
genomic: AAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|29626722|gb|CB631733.1|CB631733
EST:     CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAG
genomic: CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|88672541|gb|CI726657.1|CI726657
EST:     CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
genomic: CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|29681063|gb|CB677338.1|CB677338
EST:     AAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
genomic: AAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|29667656|gb|CB663931.1|CB663931
EST:     CAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
genomic: CAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|29626258|gb|CB631269.1|CB631269
EST:     CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAG
genomic: CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|218503299|gb|FG957875.1|FG957875
EST:     AATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAG                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAG
genomic: AATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
EST: gi|89172641|gb|CI721700.1|CI721700
EST:     CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGNGTCTGGAC                         AAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA
genomic: CTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 474

AATTTCCTACACATACATAGCCATGATGGGTTCTAAGGGTCTCACTGATGCTTCAAAGATTGCAATCTTGAATGCAAACTACATGGCAAAGCGTCTGGAGgtatatttgt ... acttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAATTCATCATTGATTTAAGAGGATTTAAG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagtttgattgtgtttgaactagttttctaagttttaccatgttacttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAATTCATCATTGATTTAAGAGGATTTAAG
   gtttgat  putative branch site (score: 474)
                        ttttctaagtttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatatttgttactcgtgatcacttacccattgctacctagtttgattgtgtttgaactagttttctaagttttaccatgttacttgtacagAAACACTACCCAGTTCTTTTCCGTGGAGTCAATGGAACTGTTGCCCATGAATTCATCATTGATTTAAGAGGATTTAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT