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gtaagtattattaactttgtagtttttatcaacccatgggcaccatctgaatcctttatgtctaattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGTATAAAGAACTTAATCTGGAG
species | Oryza sativa |
transcript | LOC_Os01g50760.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCTAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|86600966|gb|CI356723.1|CI356723
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATTCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|88380218|gb|CI516205.1|CI516205
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: CACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|27577652|gb|CB000347.1|CB000347
genomic: CACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|4714704|gb|AU055821.1|AU055821
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGANCCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCNGATCCTGAATGTGTTGCAAAAGTGANGGATCTGEST: gi|88266799|gb|CI368575.1|CI368575
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|86852882|gb|CI323191.1|CI323191
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|86419076|gb|CI053877.1|CI053877
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|27576092|gb|CA998786.1|CA998786
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTEST: gi|86836476|gb|CI348358.1|CI348358
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGT
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|33820604|gb|CF336113.1|CF336113
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|87011492|gb|CI279401.1|CI279401
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCTAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|33822342|gb|CF336983.1|CF336983
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|86535251|gb|CI175457.1|CI175457
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|29620886|gb|CB625897.1|CB625897
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTTTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|86527820|gb|CI168026.1|CI168026
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|29682410|gb|CB678685.1|CB678685
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|86252127|gb|CI055864.1|CI055864
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|86426167|gb|CI071264.1|CI071264
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCCAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|89169652|gb|CI110011.1|CI110011
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCGGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|86834085|gb|CI340224.1|CI340224
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|8856728|gb|AU094046.1|AU094046
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|88974804|gb|CI023100.1|CI023100
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|29688203|gb|CB684478.1|CB684478
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|27554346|gb|CA998246.1|CA998246
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGEST: gi|89166650|gb|CI103936.1|CI103936
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|88970717|gb|CI385383.1|CI385383
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT G-AAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|58681411|gb|CK070098.1|CK070098
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCCAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCCAAAGTGAAGGATCTGEST: gi|86521107|gb|CI161313.1|CI161313
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|29684202|gb|CB680477.1|CB680477
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|88829676|gb|CI074546.1|CI074546
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGEST: gi|86598572|gb|CI355189.1|CI355189
genomic: TTGTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
EST: GTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTT GAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
genomic: GTGCAAGCTCTCGAGCGTGCTGACGAGAACCAAAAGCACATTCTATTTgtaagtatta ... taattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTG
tgtagtttttatcaacccatgggcaccatctgaatcctttatgtctaattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGTATAAAGAACTTAATCTGGAG
gtctaat putative branch site (score: 107)
tttttatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtattattaactttgtagtttttatcaacccatgggcaccatctgaatcctttatgtctaattgacagGAAAATTATGGGAAGCCAGATCCTGAATGTGTTGCAAAAGTGAAGGATCTGTATAAAGAACTTAATCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC