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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttccatttacaagtcaaaggaatcattttctgtgctgcatgttccctgttgaactcacttttccttttcccattttggcagATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCTTGCAAGGTCAAGAATTGTTGGGTTTAAAAACTCGTGATGGTACTGTTAA

Basic information

species Oryza sativa
transcript LOC_Os01g48060.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58671651|gb|CK060337.1|CK060337
EST:     ACGGCTGAAATCATGCTTTCCCCAAGTTAATCCAGATATTGTGCTTCCAA                         ATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
genomic: ACGGCTGAAATCATGCTTCCCCCAAGTTAATCCAGATATTGTGCTTCCAAgtaggttcca ... attttggcagATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
EST: gi|218503635|gb|FG969021.1|FG969021
EST:     ACGGCTGAAATCATGCTTTCCCCAAGTTAATCCAGATATTGTGCTTCCAA                         ATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
genomic: ACGGCTGAAATCATGCTTCCCCCAAGTTAATCCAGATATTGTGCTTCCAAgtaggttcca ... attttggcagATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
EST: gi|58659022|gb|CK047702.1|CK047702
EST:     CGGCTNGAAATCATGCTTTCCCCAAGTTAATCCAGATATTGTGCTTCCAA                         ATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
genomic: CGGCT-GAAATCATGCTTCCCCCAAGTTAATCCAGATATTGTGCTTCCAAgtaggttcca ... attttggcagATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
EST: gi|33797118|gb|CF324424.1|CF324424
EST:     GGCTGAAATCATGCTTCCCCCAAGTTAATCCAGATATTGTGCTTCCAA                         ATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
genomic: GGCTGAAATCATGCTTCCCCCAAGTTAATCCAGATATTGTGCTTCCAAgtaggttcca ... attttggcagATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
EST: gi|58654299|gb|CK042979.1|CK042979
EST:     ACGGCTGAAATCATGCTTTCCCCAAGTTAATCCAGATATTGTGCTTCCAA                         ATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
genomic: ACGGCTGAAATCATGCTTCCCCCAAGTTAATCCAGATATTGTGCTTCCAAgtaggttcca ... attttggcagATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
EST: gi|2428540|gb|C73003.1|C73003
EST:     ACGGCTGAAATCATGCTTCCCCCAAGTTAATCCAGATATTGTGCTTCCAA                         ATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
genomic: ACGGCTGAAATCATGCTTCCCCCAAGTTAATCCAGATATTGTGCTTCCAAgtaggttcca ... attttggcagATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
EST: gi|58683193|gb|CK071880.1|CK071880
EST:     ACGGCTGAAATCATGCTTTCCCCAAGTTAATCCAGATATTGTGCTTCCAA                         ATGGAGGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
genomic: ACGGCTGAAATCATGCTTCCCCCAAGTTAATCCAGATATTGTGCTTCCAAgtaggttcca ... attttggcagATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
EST: gi|58672722|gb|CK061408.1|CK061408
EST:     ACGGCTGAAATCATGCTTTCCCCAAGTTAATCCAGATATTGTGCTTCCAA                         ATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
genomic: ACGGCTGAAATCATGCTTCCCCCAAGTTAATCCAGATATTGTGCTTCCAAgtaggttcca ... attttggcagATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
EST: gi|58659436|gb|CK048116.1|CK048116
EST:     ACGGCTGAAATCATGCTTTCCCCAAGTTAATCCAGATATTGTGCTTCCAA                         ATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
genomic: ACGGCTGAAATCATGCTTCCCCCAAGTTAATCCAGATATTGTGCTTCCAAgtaggttcca ... attttggcagATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
EST: gi|58596807|gb|CK007335.1|CK007335
EST:     ACGGCTGAAATCATGCTTTCCCCAAGTTAATCCAGATATTGTGCTTCCAA                         ATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT
genomic: ACGGCTGAAATCATGCTTCCCCCAAGTTAATCCAGATATTGTGCTTCCAAgtaggttcca ... attttggcagATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgtgctgcatgttccctgttgaactcacttttccttttcccattttggcagATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCTTGCAAGGTCAAGAATTGTTGGGTTTAAAAACTCGTGATGGTACTGTTAA
                         aactcac  putative branch site (score: 2)
                           ctcacttttccttttc  CT-rich tract
                                             atttt  TA-rich tract