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gtaagatatgccagcagccctttcattatgcatccatatataatcactgatcaatctttaattgctttaactatgcgggaatctcagCTGGAGCAAACCGATGTTTACATGTCTTATCTTCCACTTGCTCATATCTTTGATCGTGTTGTGGAAGAGCTATTTATGTTCCATGGTGCTTCCATTGGAT
species | Oryza sativa |
transcript | LOC_Os01g46750.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTGCCTAGTCGCAGGTGTAGATCGGCTGCTTAACTGTGTAAATGAGCAG CTGGAGCAAACCGATGTTTACATGTCTTATCTTCCACTTGCTCATATCTTTEST: gi|29673146|gb|CB669421.1|CB669421
genomic: TTTGCCTAGTCGCAGGTGTAGATCGGCTGCTTAACTGTGTAAATGAGCAGgtaagatatg ... ggaatctcagCTGGAGCAAACCGATGTTTACATGTCTTATCTTCCACTTGCTCATATCTTT
EST: TTTGCCTAGTCGCAGGTGTAGATCGGCTGCTTAACTGTGTAAATGAGCAG CTGGAGCAAACCGATGTTTACATGTCTTATCTTCCACTTGCTCATATCTTTEST: gi|58672830|gb|CK061516.1|CK061516
genomic: TTTGCCTAGTCGCAGGTGTAGATCGGCTGCTTAACTGTGTAAATGAGCAGgtaagatatg ... ggaatctcagCTGGAGCAAACCGATGTTTACATGTCTTATCTTCCACTTGCTCATATCTTT
EST: TTTGCCTAGTCGCAGGTGTAGATCGGCTGCTTAACTGTGTAAATGAGCAG CTGGAGCAAACCGATGTTTACATGTCTTATCTTCCACTTGCTCATATCTTTEST: gi|58655155|gb|CK043835.1|CK043835
genomic: TTTGCCTAGTCGCAGGTGTAGATCGGCTGCTTAACTGTGTAAATGAGCAGgtaagatatg ... ggaatctcagCTGGAGCAAACCGATGTTTACATGTCTTATCTTCCACTTGCTCATATCTTT
EST: TTTGCCTAGTCGCAGGTGTAGATCGGCTGCTTAACTGTGTAAATGAGCAG CTGGAGCAAACCGATGTTTACATGTCTTATCTTCCACTTGCTCATATCTTTEST: gi|29618098|gb|CB623110.1|CB623110
genomic: TTTGCCTAGTCGCAGGTGTAGATCGGCTGCTTAACTGTGTAAATGAGCAGgtaagatatg ... ggaatctcagCTGGAGCAAACCGATGTTTACATGTCTTATCTTCCACTTGCTCATATCTTT
EST: TTTGCCTAGTCGCAGGTGTAGATCGGCTGCTTAACTGTGTAAATGAGCAG CTGGAGCAAACCGATGTTTACATGTCTTATCTTCCACTTGCTCATATCTTT
genomic: TTTGCCTAGTCGCAGGTGTAGATCGGCTGCTTAACTGTGTAAATGAGCAGgtaagatatg ... ggaatctcagCTGGAGCAAACCGATGTTTACATGTCTTATCTTCCACTTGCTCATATCTTT
tccatatataatcactgatcaatctttaattgctttaactatgcgggaatctcagCTGGAGCAAACCGATGTTTACATGTCTTATCTTCCACTTGCTCATATCTTTGATCGTGTTGTGGAAGAGCTATTTATGTTCCATGGTGCTTCCATTGGAT
ctttaac putative branch site (score: 3)
atcaatctttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatatgccagcagccctttcattatgcatccatatataatcactgatcaatctttaattgctttaactatgcgggaatctcagCTGGAGCAAACCGATGTTTACATGTCTTATCTTCCACTTGCTCATATCTTTGATCGTGTTGTGGAAGAGCTATTTATGTTCCATGGTGCTTCCATTGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT