1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtgcgttcagtaccctcaacatagtgctcttaatagtgtttttaacatatgctttgtaggccttcattgttttgtacttatgtttgcttgtgcataattgtgaaacactctcatttacagATAGAGCAACATCAATCAAGTTCATATTCCACAAATCCTGCAAAGCGCTCCTCTCAGAAAATGAAGAAACAAAAGCTTCTTGATTTGCTAAGTG
species | Oryza sativa |
transcript | LOC_Os01g46700.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGAAGTCAAGTATTAAAATCAAGGACACGCTTATGCCGTTTGGAAAATGG ATAGAGCAACATCAATCAAGTTCATATTCCACAAATCCTGCAAAGCGCTCCEST: gi|88332864|gb|CI639712.1|CI639712
genomic: GGAAGTCAAGTATTAAAATCAAGGACACGCTTATGCCGTTTGGAAAATGGgtgcgttcag ... tcatttacagATAGAGCAACATCAATCAAGTTCATATTCCACAAATCCTGCAAAGCGCTCC
EST: GGAAGTCAAGTATTAAAATCAAGGACACGCTTATGCCGTTTGGAAAATGG ATAGAGCAACATCAATCAAGTTCATATTCCACAAATCCTGCAAAGCGCTCCEST: gi|58696065|gb|CK084752.1|CK084752
genomic: GGAAGTCAAGTATTAAAATCAAGGACACGCTTATGCCGTTTGGAAAATGGgtgcgttcag ... tcatttacagATAGAGCAACATCAATCAAGTTCATATTCCACAAATCCTGCAAAGCGCTCC
EST: GGAAGTCAAGTATTAAAATCAAGGACACGCTTATGCCGTTTGGAAAATGG ATAGAGCAACATCAATCAAGTTCATATTCCACAAATCCTGCCAAGCGCTCCEST: gi|88345953|gb|CI632426.1|CI632426
genomic: GGAAGTCAAGTATTAAAATCAAGGACACGCTTATGCCGTTTGGAAAATGGgtgcgttcag ... tcatttacagATAGAGCAACATCAATCAAGTTCATATTCCACAAATCCTGCAAAGCGCTCC
EST: GGAAGTCAAGTATTAAAATCAAGGACACGCTTATGCCGTTTGGAAAATGG ATAGAGCAACATCAATCAAGTTCATATTCCACAAATCCTGCAAAGCGCTCC
genomic: GGAAGTCAAGTATTAAAATCAAGGACACGCTTATGCCGTTTGGAAAATGGgtgcgttcag ... tcatttacagATAGAGCAACATCAATCAAGTTCATATTCCACAAATCCTGCAAAGCGCTCC
attgttttgtacttatgtttgcttgtgcataattgtgaaacactctcatttacagATAGAGCAACATCAATCAAGTTCATATTCCACAAATCCTGCAAAGCGCTCCTCTCAGAAAATGAAGAAACAAAAGCTTCTTGATTTGCTAAGTG
ctctcattt CT-rich tract
ttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgttcagtaccctcaacatagtgctcttaatagtgtttttaacatatgctttgtaggccttcattgttttgtacttatgtttgcttgtgcataattgtgaaacactctcatttacagATAGAGCAACATCAATCAAGTTCATATTCCACAAATCCTGCAAAGCGCTCCTCTCAGAAAATGAAGAAACAAAAGCTTCTTGATTTGCTAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA