1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaactaagttacttttataaatactgcactgattcattgtttttgtttttgctctttttatctctatagtaaatgcaattataatctaaattcacaatggtaccaacacaatagttgtaattactggaattttccatggccagatgacctaatcaatttctttaccatgcttctcttttcagGCCACACAAGAGCATTTGATATCACATGTCCTTCCTATGCTGGTACGGGCTTATGATGACACTGATCCCCGACTACAGGAAGAAGTACTGCGACGGACAG
species | Oryza sativa |
transcript | LOC_Os01g42950.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTGAAACACTTCTTTTGCTCGTGAAGCATGCGGATCTTATTATTCACAAG GCCACACAAGAGCATTTGATATCACATGTCCTTCCTATGCTGGTACGGGCTEST: gi|58688741|gb|CK077428.1|CK077428
genomic: GTGAAACACTTCTTTTGCTCGTGAAGCATGCGGATCTTATTATTCACAAGgtaactaagt ... ctcttttcagGCCACACAAGAGCATTTGATATCACATGTCCTTCCTATGCTGGTACGGGCT
EST: GTGAAACACTTCTTTTGCTCGTGAAGCATGCGGATCTTATTATTCACAAG GCCACACAAGAGCATTTGATATCACATGTCCTTCCTATGCTGGTACGGGCTEST: gi|29622819|gb|CB627830.1|CB627830
genomic: GTGAAACACTTCTTTTGCTCGTGAAGCATGCGGATCTTATTATTCACAAGgtaactaagt ... ctcttttcagGCCACACAAGAGCATTTGATATCACATGTCCTTCCTATGCTGGTACGGGCT
EST: GTGAAACACTTCTTTTGCTCGTGAAGCATGCGGATCTTATTATTCACAAG GCCACACAAGAGCATTTGATATCACATGTCCTTCCTATGCTGGTACGGGCT
genomic: GTGAAACACTTCTTTTGCTCGTGAAGCATGCGGATCTTATTATTCACAAGgtaactaagt ... ctcttttcagGCCACACAAGAGCATTTGATATCACATGTCCTTCCTATGCTGGTACGGGCT
aattttccatggccagatgacctaatcaatttctttaccatgcttctcttttcagGCCACACAAGAGCATTTGATATCACATGTCCTTCCTATGCTGGTACGGGCTTATGATGACACTGATCCCCGACTACAGGAAGAAGTACTGCGACGGACAG
acctaat putative branch site (score: 18)
tttctttaccatgctt putative PPT
taatcaatttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactaagttacttttataaatactgcactgattcattgtttttgtttttgctctttttatctctatagtaaatgcaattataatctaaattcacaatggtaccaacacaatagttgtaattactggaattttccatggccagatgacctaatcaatttctttaccatgcttctcttttcagGCCACACAAGAGCATTTGATATCACATGTCCTTCCTATGCTGGTACGGGCTTATGATGACACTGATCCCCGACTACAGGAAGAAGTACTGCGACGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT