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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctttgcagccttatcttaaaatctatgttgtttacatatttctctcatcggtaacaattgctatcatgcagGAAGTTGAAGGCATCCAAATGGGAATACCAAAGCTTGAGTATAATATTTCTGCCAGCAAAATATCAAGTATTACTGATGATTGCAAGCGTCTCCAAACAT

Basic information

species Oryza sativa
transcript LOC_Os01g42850.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25798441|gb|CA754402.1|CA754402
EST:     CAAGAGTGACTGCAATAGTCCCACATCTNANAGAAAGATGTTCTGCGGTG                         GAAGTTGAAGGCATCCAAATGGGAATACCAGAGCTTGAGTATAATATTTCT
genomic: CAAGAGTGACTGCAATAGTCCCACATCTAAAAGAAAGATGTTCTGCGGTGgtgagtcttt ... tatcatgcagGAAGTTGAAGGCATCCAAATGGGAATACCAAAGCTTGAGTATAATATTTCT
EST: gi|29672224|gb|CB668499.1|CB668499
EST:     CAAGAGTGACTGCAATAGTCCCACATCTAAAAGAAAGATGTTCTGCGGTG                         GAAGTTGAAGGCATCCAAATGGGAATACCAAAGCTTGAGTATAATATTTCT
genomic: CAAGAGTGACTGCAATAGTCCCACATCTAAAAGAAAGATGTTCTGCGGTGgtgagtcttt ... tatcatgcagGAAGTTGAAGGCATCCAAATGGGAATACCAAAGCTTGAGTATAATATTTCT
EST: gi|58676123|gb|CK064810.1|CK064810
EST:     CAAGAGTGACTGCAATAGTCCCACATCTAAAAGAAAGATGTTCTGCGGTG                         GAAGTTGAAGGCATCCAAATGGGAATACCAAAGCTTGAGTATAATATTTCT
genomic: CAAGAGTGACTGCAATAGTCCCACATCTAAAAGAAAGATGTTCTGCGGTGgtgagtcttt ... tatcatgcagGAAGTTGAAGGCATCCAAATGGGAATACCAAAGCTTGAGTATAATATTTCT
EST: gi|29674599|gb|CB670874.1|CB670874
EST:     CAAGAGTGACTGCAATAGTCCCACATCTAAAAGAAAGATGTTCTGCGGTG                         GAAGTTGAAGGCATCCAAATGGGAATACCAAAGCTTGAGTATAATATTTCT
genomic: CAAGAGTGACTGCAATAGTCCCACATCTAAAAGAAAGATGTTCTGCGGTGgtgagtcttt ... tatcatgcagGAAGTTGAAGGCATCCAAATGGGAATACCAAAGCTTGAGTATAATATTTCT
EST: gi|29674597|gb|CB670872.1|CB670872
EST:     CAAGAGTGACTGCAATAGTCCCACATCTAAAAGAAAGATGTTCTGCGGTG                         GAAGTTGAAGGCATCCAAATGGGAATACCAAAGCTTGAGTATAATATTTCT
genomic: CAAGAGTGACTGCAATAGTCCCACATCTAAAAGAAAGATGTTCTGCGGTGgtgagtcttt ... tatcatgcagGAAGTTGAAGGCATCCAAATGGGAATACCAAAGCTTGAGTATAATATTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaatctatgttgtttacatatttctctcatcggtaacaattgctatcatgcagGAAGTTGAAGGCATCCAAATGGGAATACCAAAGCTTGAGTATAATATTTCTGCCAGCAAAATATCAAGTATTACTGATGATTGCAAGCGTCTCCAAACAT
                                cggtaac  putative branch site (score: 3)
           ttgtttacatattt  TA-rich tract