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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taatgattccatcgttctcattctatggacaccttcctatgcgttatttttctctcttttgtatgttccatgttcttatatggatttttctgcgtagtagAAGAAAATTGCTCAGCAGCAACAATTATTACAGCAGCAAAGCAACAGCCAGCAGCATCCACAGCTTCAGCAGCCTGCTGTCTCCAGTCAGCAGTCTCAAA

Basic information

species Oryza sativa
transcript LOC_Os01g42260.3
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g42260.4 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G022383_T01 (Zea mays), 3'ss of exon 9
-taatgattccatcgttctcattctatggacacct---tcctatgcgttatttttctctcttttgtatgtt-ccatgttcttatatggatttttctgcgtagtagAAGAAAATTGCTCAGCAGCAACAATTATTACAGCAGCAAAGCAACAGCCAGCAGCATCCACAGCTTCAGCAGCCT--GCTGTCTCCAGTCAGCAGTCTCAAA
   || | |       | ||||   ||  || |||   ||||   | ||| ||||||  || || | || | |||||||||||||  |||||| ||| ||||||||||||| ||||||||||||| ||| ||||||| ||||||||||| ||||| ||||  |||||||  || |||| |  ||   || | |||   || |     
tccataagtatcctcctttcatga-atacactcctgactccttcacattagttttctagctcttttctgctgccatgttcttatacagatttt-ctgtgtagTAGAAGAAACTTGCTCAGCAGCAGCAACTATTACAACAGCAAAGCAATAGCCAACAGCTCCCACAGCAACATCAGCTTCAGCAACCTGCTGTCTCTAGCC-----

upper sequence: LOC_Os01g42260.4 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G425377_T01 (Zea mays), 3'ss of exon 1
taatgattccat-cgttctcattctatggacaccttcctatgcgttatttttctctcttttgtatgtt-ccatgttcttatatggatttttctgcgtagtagAAGAAAATTGCTCAGCAGCAACAATTATTACAGCAGCAAAGCAACAGCCAGCAGCATCCACAGC---------TTCAGCAGCCTGCTGTCTCCAGTCAGCAGTCTCAAA
 ||       |  ||| ||| |   ||| |  |  ||||   | ||| ||||||  |  || | || | |||||||||||||   ||||| ||| ||||||||||||| ||||||||||||| ||| ||||||| ||||||||||| ||||| ||||  |||||||         ||||||| ||||||||||| || ||||         
-aacatccataagcgtcctcctggcatgaatgcactccttcacattagttttctagcccttttctgctgccatgttcttatacatatttt-ctgtgtagtagAAGAAACTTGCTCAGCAGCAGCAACTATTACAACAGCAAAGCAATAGCCAACAGCTCCCACAGCAACATCAGCTTCAGCAACCTGCTGTCTCTAGCCAGC---------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttctctcttttgtatgttccatgttcttatatggatttttctgcgtagtagAAGAAAATTGCTCAGCAGCAACAATTATTACAGCAGCAAAGCAACAGCCAGCAGCATCCACAGCTTCAGCAGCCTGCTGTCTCCAGTCAGCAGTCTCAAA
                                       tttttctgc  CT-rich tract
                              ttatatggattttt  TA-rich tract