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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgtctctacctctaggctctagcaatcccctttctctaacacgtgcaaaactataatctgattttatttttatttgggtcttctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTCAGACACTACTGGATGTTATTCATACTTCTAAAAAATGCGTTTGTTCAGA

Basic information

species Oryza sativa
transcript LOC_Os01g37837.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89173717|gb|CI041610.1|CI041610
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|86436175|gb|CI117897.1|CI117897
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCCAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|24468659|gb|CA305608.1|CA305608
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|12623127|gb|AU173340.1|AU173340
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATNTGAGCTAGATGAGGAATCAACAAAGATTTTNTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|15851150|gb|BI799426.1|BI799426
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|86484977|gb|CI127610.1|CI127610
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|89180489|gb|CI044768.1|CI044768
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|86866602|gb|CI343487.1|CI343487
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|88847058|gb|CI001330.1|CI001330
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|88532291|gb|CI461768.1|CI461768
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|18386014|gb|BM419213.1|BM419213
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|89196741|gb|CI402495.1|CI402495
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|29633862|gb|CB638871.1|CB638871
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATTTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|88850119|gb|CI091414.1|CI091414
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|89173694|gb|CI041587.1|CI041587
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|58604093|gb|CK014621.1|CK014621
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|89193427|gb|CI050725.1|CI050725
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCGAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|88245565|gb|CI245414.1|CI245414
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|66930636|gb|CX117484.1|CX117484
EST:     AAAT-ATCCAAATTC-AAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: AAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|88846799|gb|CI373567.1|CI373567
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|58659708|gb|CK048388.1|CK048388
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTGC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|88511293|gb|CI438799.1|CI438799
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|86415314|gb|CI069717.1|CI069717
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|88903213|gb|CI088751.1|CI088751
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|27548103|gb|CA766188.2|CA766188
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|88480715|gb|CI417986.1|CI417986
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|88274771|gb|CI395177.1|CI395177
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|86536514|gb|CI176720.1|CI176720
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|88388594|gb|CI683376.1|CI683376
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|86539861|gb|CI180067.1|CI180067
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
EST: gi|88846800|gb|CI373568.1|CI373568
EST:     GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAG                         GGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC
genomic: GGATAGCAAACAAGTTGCTCGACTCCAAATCAAATAATCCAAATTCAAAGgtccgtctct ... ctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacacgtgcaaaactataatctgattttatttttatttgggtcttctcttgacagGGAGATGCTATCTGAGCTAGATGAGGAATCAACAAAGATTTTCTTGCTTTCAGACACTACTGGATGTTATTCATACTTCTAAAAAATGCGTTTGTTCAGA
                                         tcttctctt  CT-rich tract
         aaaactataatctgat  TA-rich tract