1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cctccttccaactttctcatatagttatatgactggtttatacataagctgtatgtattacgctaagttgtaattgatcaattcgtatttaatattttagGATATCCTCATTACTGGGGCACACAGGAAGGTGAATACCAACAAGGCAGATAAGGTCGCAACACAGAACTACGTTTCAACTCGACTCCGTTATTCTCTTA
species | Oryza sativa |
transcript | LOC_Os01g36840.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGTTCAATGATGATGGGGATATGGAGCTTGATTTCAACTCCGATAAGAAG GATATCCTCATTACTGGGGCACACAGGAAGGTGAATACCAACAAGGCAGATEST: gi|86905480|gb|CI285443.1|CI285443
genomic: GGTTCAATGATGATGGGGATATGGAGCTTGATTTCAACTCCGATAAGAAGgtaagtaatg ... aatattttagGATATCCTCATTACTGGGGCACACAGGAAGGTGAATACCAACAAGGCAGAT
EST: GGTTCAATGATGATGGGGATATGGAGCTTGATTTCAACTCCGATAAGAAG GATATCCTCATTACTGGGGCACACAGGAAGGTGAATACCAACAAGGCAGATEST: gi|58692285|gb|CK080972.1|CK080972
genomic: GGTTCAATGATGATGGGGATATGGAGCTTGATTTCAACTCCGATAAGAAGgtaagtaatg ... aatattttagGATATCCTCATTACTGGGGCACACAGGAAGGTGAATACCAACAAGGCAGAT
EST: GGTTCAATGATGATGGGGATATGGAGCTTGATTTCAACTCCGATAAGAAG GATATCCTCATTACTGGGGCACACAGGAAGGTGAATACCAACAAGGCGAGAEST: gi|87023564|gb|CI286315.1|CI286315
genomic: GGTTCAATGATGATGGGGATATGGAGCTTGATTTCAACTCCGATAAGAAGgtaagtaatg ... aatattttagGATATCCTCATTACTGGGGCACACAGGAAGGTGAATACCAACAAGGC-AGA
EST: GGTTCAATGATAATGGGGATATGGAGCTTGATTTCAACTCCGATAAGAAG GATATCCTCATTACTGGGGCACACAGGAAGGTGAATACCAACAAGGCAGAT
genomic: GGTTCAATGATGATGGGGATATGGAGCTTGATTTCAACTCCGATAAGAAGgtaagtaatg ... aatattttagGATATCCTCATTACTGGGGCACACAGGAAGGTGAATACCAACAAGGCAGAT
aagctgtatgtattacgctaagttgtaattgatcaattcgtatttaatattttagGATATCCTCATTACTGGGGCACACAGGAAGGTGAATACCAACAAGGCAGATAAGGTCGCAACACAGAACTACGTTTCAACTCGACTCCGTTATTCTCTTA
atttaat putative branch site (score: 5)
taattgatcaattcgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctccttccaactttctcatatagttatatgactggtttatacataagctgtatgtattacgctaagttgtaattgatcaattcgtatttaatattttagGATATCCTCATTACTGGGGCACACAGGAAGGTGAATACCAACAAGGCAGATAAGGTCGCAACACAGAACTACGTTTCAACTCGACTCCGTTATTCTCTTA
-ctccttc
- - - - - - - - - - - - - - -tgactgg
- - - - - - - - - - - - - - - - - - - - - - - - ctgtatg