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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caatccatgggagtaaaaggctttttctgggggcctatgcgtctaactcttgtgtttttattattagttaatactgtttctgattcttctctttttgcagCACGGGTCAGAGGTATATATATACAGGATCCAGTGACCAATGTGTATATATTTATGATGTG

Basic information

species Oryza sativa
transcript LOC_Os01g28680.5
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29666639|gb|CB662914.1|CB662914
EST:     CATTCAGTGTTACGTACACTAATTCGTTGCTATTTTTCCCCAATACACAG                         CACGGGTCAGAGGTATATATATACAGGATCCAGTGACCAATGTGTATATAT
genomic: CATTCAGTGTTACGTACACTAATTCGTTGCTATTTTTCCCCAATACACAGgttagtttag ... ctttttgcagCACGGGTCAGAGGTATATATATACAGGATCCAGTGACCAATGTGTATATAT
EST: gi|29664057|gb|CB660332.1|CB660332
EST:     CATTCAGTGTTACGTACACTAATTCGTTGCTATTTTTCCCCAATACACAG                         CACGGGTCAGAGGTATATATATACAGGATCCAGTGACCAATGTGTATATAT
genomic: CATTCAGTGTTACGTACACTAATTCGTTGCTATTTTTCCCCAATACACAGgttagtttag ... ctttttgcagCACGGGTCAGAGGTATATATATACAGGATCCAGTGACCAATGTGTATATAT
EST: gi|313079835|gb|HO213274.1|HO213274
EST:     ACACTAATTCGTTGCTATTTTTCCCCAATACACAG                         CACGGGTCAGAGGTATATATATACAGGATCCAGTGACCAATGTGTATATAT
genomic: ACACTAATTCGTTGCTATTTTTCCCCAATACACAGgttagtttag ... ctttttgcagCACGGGTCAGAGGTATATATATACAGGATCCAGTGACCAATGTGTATATAT
EST: gi|87010952|gb|CI286027.1|CI286027
EST:     CATTCAGTGTTACGTACACTAATTCGTTGCTATTTTTCCCCAATACACAG                         CACGGGTCAGAGGTATATATATACAGGATCCAGTGACCAATGTGTATA
genomic: CATTCAGTGTTACGTACACTAATTCGTTGCTATTTTTCCCCAATACACAGgttagtttag ... ctttttgcagCACGGGTCAGAGGTATATATATACAGGATCCAGTGACCAATGTGTATA
EST: gi|38481282|gb|CF965371.1|CF965371
EST:     GTTGCTATTTTTCCCCAATACACAG                         CACGGGTCAGAGGTATATATATACAGGATCCAGTGACCAATGTGTATATAT
genomic: GTTGCTATTTTTCCCCAATACACAGgttagtttag ... ctttttgcagCACGGGTCAGAGGTATATATATACAGGATCCAGTGACCAATGTGTATATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actcttgtgtttttattattagttaatactgtttctgattcttctctttttgcagCACGGGTCAGAGGTATATATATACAGGATCCAGTGACCAATGTGTATATATTTATGATGTG
                            ctgtttctgattcttc  CT-rich tract
       tgtttttattattagt  TA-rich tract