1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...acgtttacaagtcaactaaaagcatgcatgcctcttttgttagtaagtcaggtggttgacattcaagatattaattaatttttttaacggtgatgaccagGGATGGTGGCTTTTGAGAAACAATGTGGAGCTGTCCCTTTTGGCTGCTACAGTTAACTGCTTCATTTTTGTTATTGG
species | Oryza sativa |
transcript | LOC_Os01g25189.4 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGCTGGTTTTTGGTGATCTAGTGTTCATTCCGTTTACCTTCACCATTCAG GGATGGTGGCTTTTGAGAAACAATGTGGAGCTGTCCCTTTTGGCTGCTACAEST: gi|87015902|gb|CI279654.1|CI279654
genomic: TGCTGGTTTTTGGTGATCTAGTGTTCATTCCGTTTACCTTCACCATTCAGgtgtgcatcc ... tgatgaccagGGATGGTGGCTTTTGAGAAACAATGTGGAGCTGTCCCTTTTGGCTGCTACA
EST: TGCTGGTTTTTGGTGATCTAGTGTTCATTCCGTTTACCTTCACCATTCAG GGATGGTGGCTTTTGAGAAACAATGTGGAGCTGTCCCTTTTGGCTGCTACA
genomic: TGCTGGTTTTTGGTGATCTAGTGTTCATTCCGTTTACCTTCACCATTCAGgtgtgcatcc ... tgatgaccagGGATGGTGGCTTTTGAGAAACAATGTGGAGCTGTCCCTTTTGGCTGCTACA
agtcaggtggttgacattcaagatattaattaatttttttaacggtgatgaccagGGATGGTGGCTTTTGAGAAACAATGTGGAGCTGTCCCTTTTGGCTGCTACAGTTAACTGCTTCATTTTTGTTATTGG
ttttaac putative branch site (score: 2)
ttgacattcaagatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgtttacaagtcaactaaaagcatgcatgcctcttttgttagtaagtcaggtggttgacattcaagatattaattaatttttttaacggtgatgaccagGGATGGTGGCTTTTGAGAAACAATGTGGAGCTGTCCCTTTTGGCTGCTACAGTTAACTGCTTCATTTTTGTTATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT