1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaacatctgatttagtttagtggaatattattctatgtagtttcccccttttcttttagctcatgcaggagacttactgtacttcattcagGTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG
species | Oryza sativa |
transcript | LOC_Os01g19150.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG GTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACEST: gi|33683226|gb|CF311465.1|CF311465
genomic: CTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAGgtaacatctg ... cttcattcagGTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTAC
EST: CTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG GTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACEST: gi|29668828|gb|CB665103.1|CB665103
genomic: CTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAGgtaacatctg ... cttcattcagGTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTAC
EST: CTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG GTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACEST: gi|8856575|gb|AU093893.1|AU093893
genomic: CTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAGgtaacatctg ... cttcattcagGTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTAC
EST: TGAAATTATCAAG GTACTGGGTACTCCCAACAA-GGNAGAATTCAAACATATGAATCGGAACTAEST: gi|58675098|gb|CK063785.1|CK063785
genomic: TGAAATTATCAAGgtaacatctg ... cttcattcagGTACTGGGTACT-CCAACAAGGGAAGAAATCAAACATATGAATCCGAACTA
EST: GTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG GTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACEST: gi|29666992|gb|CB663267.1|CB663267
genomic: GTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAGgtaacatctg ... cttcattcagGTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTAC
EST: CTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG GTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACEST: gi|29628183|gb|CB633194.1|CB633194
genomic: CTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAGgtaacatctg ... cttcattcagGTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTAC
EST: CTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG GTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACEST: gi|29666642|gb|CB662917.1|CB662917
genomic: CTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAGgtaacatctg ... cttcattcagGTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTAC
EST: CTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG GTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACEST: gi|218502361|gb|FG956952.1|FG956952
genomic: CTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAGgtaacatctg ... cttcattcagGTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTAC
EST: CTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAG GTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTAC
genomic: CTGTTTTTCCTGGTGACAGTGGCGTCGACCAACTTGTTGAAATTATCAAGgtaacatctg ... cttcattcagGTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTAC
gtagtttcccccttttcttttagctcatgcaggagacttactgtacttcattcagGTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG
gacttac putative branch site (score: 2)
cttcattc putative PPT
ttttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatctgatttagtttagtggaatattattctatgtagtttcccccttttcttttagctcatgcaggagacttactgtacttcattcagGTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA