Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggctccctcagtgacacacttggcccatcctcttaagctatactcatgcttttctaaatctcaccgtcgtcttcttcaactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG

Basic information

species Oryza sativa
transcript LOC_Os01g18630.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g18630.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G077233_T04 (Zea mays), 3'ss of exon 10
--------------------------------------------------------------------gtggctccctcagtgaca---cacttggcccatcctcttaagc-tatactcatgctt-ttctaaatctca-----ccgtcgtcttcttcaactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG
                                                                     |   |  |  ||| |||   || ||     ||  ||||  |   | ||  || ||| |||||  ||||      ||   |  | | |      |||||||| ||||||||||||||||   ||| |||||| | |||||||| ||||| ||||| || ||||| || ||||| || || || |||||
gtaactccctacttacagtttcttcagtgtttgaattagtagtgaaacattgtctagggaaccatgatctcattttcaaagttacagttcatttattggatattctttggtgcaaacatatacttcttctatttctcttgaatccactgattgcctttgtgctgcagTACATAGTGAAGCTGGAGCAAGCAGGACAAACTATCTGCATCAGTGGGTTTATGGCATTTGACGTACCGCCTCCTCGTGGTCCTCTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88466426|gb|CI529835.1|CI529835
EST:     TCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: TCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29631070|gb|CB636079.1|CB636079
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86873001|gb|CI326998.1|CI326998
EST:     ATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29643124|gb|CB648131.1|CB648131
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86869677|gb|CI322163.1|CI322163
EST:     ACCTTTCATTCACCATAGC-AACAAGACCTTCACC-TGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCCAAGGTCAAACTGTTTGCATCAGCGGGTT
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAG-CAAGGTCAAACTGTTTGCATCAGCGGGTT
EST: gi|15853958|gb|BI806754.1|BI806754
EST:     CCTTTCATTCACCAGTAGC--AC-AGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: CCTTTCATTCACCA-TAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29631103|gb|CB636112.1|CB636112
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86876454|gb|CI318429.1|CI318429
EST:     ACCTTTCATTCACCATATCAAACAAGACCTTCACCTTTACACCAGAGCAG                         TACGTAGTGAAGGCTGGAGCAGGCAAGGTCAAACTGTTTGCATCAGCGGGT
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAA-GCTGGAGCA-GCAAGGTCAAACTGTTTGCATCAGCGGGT
EST: gi|89195188|gb|CI051301.1|CI051301
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|88993436|gb|CI257864.1|CI257864
EST:     TGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: TGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|88844256|gb|CI005629.1|CI005629
EST:     CCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: CCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|89185110|gb|CI049656.1|CI049656
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86872026|gb|CI333187.1|CI333187
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTATTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29662754|gb|CB659029.1|CB659029
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|87022160|gb|CI259232.1|CI259232
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|427672|gb|D23806.1|D23806
EST:     CTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: CTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86825066|gb|CI358229.1|CI358229
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAA                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|89198402|gb|CI007462.1|CI007462
EST:     ACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|88252147|gb|CI350575.1|CI350575
EST:     ACCTGTCATTCACCATAGCAAACAATACCTTCACC-TGACACCAGAGCAG                         TACGGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCCGGGT
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTAC-GTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAG-CGGGT
EST: gi|86876456|gb|CI318430.1|CI318430
EST:     ACCTTTCATTCACCATACCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86907659|gb|CI296618.1|CI296618
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86423128|gb|CI060701.1|CI060701
EST:     TGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: TGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|218493897|gb|FG949292.1|FG949292
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86841464|gb|CI336450.1|CI336450
EST:     CCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: CCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29665540|gb|CB661815.1|CB661815
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86886269|gb|CI335972.1|CI335972
EST:     ACACCAGAGCAG                         TAGGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29645988|gb|CB650995.1|CB650995
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|87029011|gb|CI351314.1|CI351314
EST:     ATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86836859|gb|CI347447.1|CI347447
EST:     ACCCTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86884877|gb|CI314453.1|CI314453
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACC-TGACACCAGAGCAG                         TACGTAGTTAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGC-GGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86430021|gb|CI082444.1|CI082444
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29664682|gb|CB660957.1|CB660957
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|87022142|gb|CI259214.1|CI259214
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86853703|gb|CI330554.1|CI330554
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|88993443|gb|CI257871.1|CI257871
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29639119|gb|CB644128.1|CB644128
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|29683212|gb|CB679487.1|CB679487
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|88264965|gb|CI368739.1|CI368739
EST:     TCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: TCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86872998|gb|CI326995.1|CI326995
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGACCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86874941|gb|CI325397.1|CI325397
EST:     CCATAGCAAACAAGACCTTCACCTTGACACCAGACCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: CCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|27578101|gb|CB000796.1|CB000796
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|88257706|gb|CI360292.1|CI360292
EST:     CACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: CACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86416575|gb|CI030586.1|CI030586
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86864150|gb|CI334002.1|CI334002
EST:     ACCTTTACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86828240|gb|CI276836.1|CI276836
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
EST: gi|86254951|gb|CI017071.1|CI017071
EST:     ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAG                         TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC
genomic: ACCTTTCATTCACCATAGCAAACAAGACCTTCACCTTGACACCAGAGCAGgtggctccct ... aactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagctatactcatgcttttctaaatctcaccgtcgtcttcttcaactatgcagTACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG
                                     tcttcttca  CT-rich tract
                 ttttctaaat  TA-rich tract