Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccctaacaaagtagaacacaccttatactttttggatttattttctaggcaatgagcagtgcaattttaatgatatgtctgacatgtctctactttgcagATGAAAAGAGGGAATGCTGAGGCAAGTTCATCGCCATTTTTACTGAGGAGACCGATTTCAATTTTCTATTCTTTATATTTGGTTAAGACAAATAGATCGC

Basic information

species Oryza sativa
transcript LOC_Os01g16170.3
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38469369|gb|CF953500.1|CF953500
EST:     CTATGGCGGTAATCTATATAGGTGGACGACTTCCCCAGATCTGGTTAAAT                         ATGAAAAGAGGGAATGCTGAGGCAAGTTCATCGCCATTTTTACTGAGGAGA
genomic: CTATGGCGGTAATCTATATGGGTGGACGACTTCCCCAGATCTGGTTAAATgtaatacttc ... tactttgcagATGAAAAGAGGGAATGCTGAGGCAAGTTCATCGCCATTTTTACTGAGGAGA
EST: gi|38469843|gb|CF953974.1|CF953974
EST:     CTATGGCGGTAATCTATATNGGTGGACGACTTCCCCAGATCTGGTTAAAT                         ATGAAAAGAGGGAATGCTGAGGCAAGTTCATCGCCATTTTTACTGAGGAGA
genomic: CTATGGCGGTAATCTATATGGGTGGACGACTTCCCCAGATCTGGTTAAATgtaatacttc ... tactttgcagATGAAAAGAGGGAATGCTGAGGCAAGTTCATCGCCATTTTTACTGAGGAGA
EST: gi|33684544|gb|CF312783.1|CF312783
EST:     CTATGGCGGTAATCTATATGGGTGGACGACTTCCCCAGATCTGGTTAAAT                         ATGAAAAGAGGGAATGCTGAGGCAAGTTCATCGCCATTTTTACTGAGGAGA
genomic: CTATGGCGGTAATCTATATGGGTGGACGACTTCCCCAGATCTGGTTAAATgtaatacttc ... tactttgcagATGAAAAGAGGGAATGCTGAGGCAAGTTCATCGCCATTTTTACTGAGGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggcaatgagcagtgcaattttaatgatatgtctgacatgtctctactttgcagATGAAAAGAGGGAATGCTGAGGCAAGTTCATCGCCATTTTTACTGAGGAGACCGATTTCAATTTTCTATTCTTTATATTTGGTTAAGACAAATAGATCGC
                               gtctgac  putative branch site (score: 3)
                                         tctctacttt  putative PPT
                 aattttaatgatatgt  TA-rich tract