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gtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGCCCAGATATAAGAATCGTTACAGTTTGTTTGGAGGGTCTCGAGAACATT
species | Oryza sativa |
transcript | LOC_Os01g14950.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGEST: gi|29643711|gb|CB648718.1|CB648718
genomic: AGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGEST: gi|33678045|gb|CF306284.1|CF306284
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: GCATGGGCCATGTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGEST: gi|29657150|gb|CB653425.1|CB653425
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGEST: gi|58673193|gb|CK061879.1|CK061879
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATEST: gi|29677720|gb|CB673995.1|CB673995
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTAT
EST: AGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGEST: gi|29622104|gb|CB627115.1|CB627115
genomic: AGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGEST: gi|29676486|gb|CB672761.1|CB672761
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGEST: gi|218494873|gb|FG960745.1|FG960745
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: GCGTGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGEST: gi|29681892|gb|CB678167.1|CB678167
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: GGCGGTAGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGEST: gi|66912883|gb|CX099731.1|CX099731
genomic: GGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGEST: gi|218480625|gb|FG956873.1|FG956873
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGEST: gi|218501071|gb|FG960845.1|FG960845
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGEST: gi|218505438|gb|FG959801.1|FG959801
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGEST: gi|218479493|gb|FG944059.1|FG944059
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGEST: gi|58684581|gb|CK073268.1|CK073268
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGEST: gi|13806131|gb|AU181373.1|AU181373
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGEST: gi|218496280|gb|FG960701.1|FG960701
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
EST: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAA GTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
genomic: GCATGGGCCATCTCAAATGCTACTTCAGGCGGTAGCCATGATCAAATCAAgtatgtttac ... gttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTG
atagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGCCCAGATATAAGAATCGTTACAGTTTGTTTGGAGGGTCTCGAGAACATT
atttgat putative branch site (score: 56)
atttgatattgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttactcaccttgcaccagttctattcagctttatgaaatgcaaatataaccgctttcatagtttcatgttaagcttcatttggatttgatattgtatggtttgttaaaatagGTATCTGGTGAGCGAGGGCTGCATCAAGCCATTGTGTGATCTTCTTATTTGCCCAGATATAAGAATCGTTACAGTTTGTTTGGAGGGTCTCGAGAACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG