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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacccgttttcatgccatgcaaaaccaccaaattcatcgtatttttgtgcttcacaggatgtacctaagtttcattcttatgtaaacaaattccaattttttcattgactacctttcatctactagaacatcactaatgcaatcatgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGCAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG

Basic information

species Oryza sativa
transcript LOC_Os01g13770.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g13770.3 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G070605_T01 (Zea mays), 3'ss of exon 9
gtaacccgttttcatgccatgcaaaaccaccaaattcatcgtatttttgtgcttcacaggatgtacctaagtttcattcttatgtaaacaaattccaattttttcattgactacctttcatctactagaacatcactaatgcaatcatgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGCAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG
                                     | | |   |      || |     | || ||   |||   |       | |  ||  | | | |||  | ||   | ||  ||| |  | ||      | |||| |||  | |  ||||| ||||||| |||||  ||||||||||||| |||||||| ||||| || ||||||||||||||  | || || |||||||| ||||| ||| |||||||||
-----------------------------------gtaacatgaatcacccgtttagcaattttagctggctttggcttgc---cacatgaagcctagtattt--actg---atctaccattttgttga------ccaatg-aatggtat--tgcagATTGCTACGAACACCTTGGAGCGAGTGGCTCCTCTGACACATGCTGTGGGCAATGTGTTGAAGCGTGTGTTTGTCATTGGCTTCTCAATCGTTGTTTTTG

upper sequence: LOC_Os01g13770.3 (Oryza sativa), 3'ss of exon 8
lower sequence: EFJ15759 (Selaginella moellendorffii), 3'ss of exon 9
gtaacccgttttcatgccatgcaaaaccaccaaattcatcgtatttttgtgcttcacaggatgtacctaagtttcattcttatgtaaacaaattccaattttttcattgactacctttcatctactagaacatcactaatgcaatcatgtcatgc-agGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGCAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG
                                                                                                             |  || ||   |||  |  | ||              ||||  | | || ||||||  |||||| ||||||||||||||||||| |||||||| || ||||| ||  | || || || ||||||||||| ||||| ||| || |||| |
-----------------------------------------------------------------------------------------------------------gtaagactttagttcttttgcatcaaaggcggcttgtcaatgttttcccagATTGCTAACAACACTTTGGAGCGAGTGGCCCCTCTAACGCATGCTGTCGGCAACGTTCTAAAGAGAGTGTTCGTCATTGGTTTCTCTATCGTTATTTTCG

upper sequence: LOC_Os01g13770.3 (Oryza sativa), 3'ss of exon 8
lower sequence: EFJ38162 (Selaginella moellendorffii), 3'ss of exon 8
gtaacccgttttcatgccatgcaaaaccaccaaattcatcgtatttttgtgcttcacaggatgtacctaagtttcattcttatgtaaacaaattccaattttttcattgactacctttcatctactagaacatcactaatgcaatcatgtcatgc-agGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGCAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG
                                                                                                             |  || ||   |||  |  | ||              ||||  | | || ||||||  |||||| ||||||||||||||||||| |||||||| || ||||| ||  | || || || ||||||||||| ||||| ||| || ||||||
-----------------------------------------------------------------------------------------------------------gtaagactttagttcttttgcatcaaaggcggcttgtcaatgttctcccagATTGCTAACAACACTTTGGAGCGAGTGGCCCCTCTAACGCATGCTGTCGGCAACGTTCTAAAGAGAGTGTTCGTCATTGGTTTCTCTATCGTTATTTTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86848816|gb|CI295657.1|CI295657
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29661885|gb|CB658160.1|CB658160
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|86598026|gb|CI278416.1|CI278416
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29685282|gb|CB681557.1|CB681557
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTCCCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29687904|gb|CB684179.1|CB684179
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|325493498|gb|JG458022.1|JG458022
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGA
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGA
EST: gi|29679987|gb|CB676262.1|CB676262
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88983468|gb|CI028695.1|CI028695
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88980311|gb|CI026578.1|CI026578
EST:     ACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: ACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|55408699|gb|CV721075.1|CV721075
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29685328|gb|CB681603.1|CB681603
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|87040823|gb|CI195445.1|CI195445
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29666541|gb|CB662816.1|CB662816
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29671527|gb|CB667802.1|CB667802
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|84117005|gb|CD150772.1|CD150772
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|86501723|gb|CI144356.1|CI144356
EST:     CGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: CGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACC-TCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29616354|gb|CB621366.1|CB621366
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29616223|gb|CB621235.1|CB621235
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|58690439|gb|CK079126.1|CK079126
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88987992|gb|CI018042.1|CI018042
EST:     TCGTTTCTGACTTTTTCTTCGTGGGACTGTTCTACCACCTCTATAAACAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29663112|gb|CB659387.1|CB659387
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|313084102|gb|HO213885.1|HO213885
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29618840|gb|CB623852.1|CB623852
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|89169034|gb|CI020574.1|CI020574
EST:     GTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: GTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88975808|gb|CI024059.1|CI024059
EST:     CCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: CCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88971439|gb|CI017753.1|CI017753
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29663772|gb|CB660047.1|CB660047
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88971431|gb|CI017745.1|CI017745
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|87016722|gb|CI275724.1|CI275724
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29613763|gb|CB618776.1|CB618776
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|86831593|gb|CI301443.1|CI301443
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|56157641|gb|C24843.2|C24843
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29658696|gb|CB654971.1|CB654971
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29659419|gb|CB655694.1|CB655694
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88994677|gb|CI036258.1|CI036258
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|44677263|gb|CR290697.1|CR290697
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29662714|gb|CB658989.1|CB658989
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29663111|gb|CB659386.1|CB659386
EST:     TCGTTTTTGACCTTTTCTTCGTGGGACTGTTCTACCACCTTTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29671609|gb|CB667884.1|CB667884
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|86254987|gb|CI017107.1|CI017107
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29685820|gb|CB682095.1|CB682095
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29685985|gb|CB682260.1|CB682260
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|86418717|gb|CI053518.1|CI053518
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29660916|gb|CB657191.1|CB657191
EST:     TCGTTTTTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88982620|gb|CI028035.1|CI028035
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29657796|gb|CB654071.1|CB654071
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29643944|gb|CB648951.1|CB648951
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88983619|gb|CI028787.1|CI028787
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|25797136|gb|CA753097.1|CA753097
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88971539|gb|CI017853.1|CI017853
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88844075|gb|CI001132.1|CI001132
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88217814|gb|CI217663.1|CI217663
EST:     ACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: ACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29643945|gb|CB648952.1|CB648952
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATACCCAG                         GTTGTTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29656095|gb|CB652370.1|CB652370
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29661884|gb|CB658159.1|CB658159
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGC
EST: gi|29683569|gb|CB679844.1|CB679844
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|86250525|gb|CI003643.1|CI003643
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|86854673|gb|CI258966.1|CI258966
EST:     CGTTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACATACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: CG-TTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29658105|gb|CB654380.1|CB654380
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29655875|gb|CB652150.1|CB652150
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|86828588|gb|CI278677.1|CI278677
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29636760|gb|CB641769.1|CB641769
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29642430|gb|CB647437.1|CB647437
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|29657882|gb|CB654157.1|CB654157
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
EST: gi|88342868|gb|CI640201.1|CI640201
EST:     TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAG                         GTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC
genomic: TCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 73 (downstream exon)
Score: 101

ATTGCAGCATGGTTTTAACGATGCAATTGCAAAAGTAGGCTTGACAAAGTTCGTTTCTGACCTTTTCTTCGTGGGACTGTTCTACCACCTCTATAACCAGgtaacccgtt ... tgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGCAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattgactacctttcatctactagaacatcactaatgcaatcatgtcatgcagGTTGCTACAAACACTCTGGAGCGAGTGGCCCCTCTGACGCATGCCGTTGGCAATGTGTTGAAAAGGGTTTTCGTCATTGGATTCTCCATCATTGTTTTTG
                               cactaat  putative branch site (score: 101)