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gttctattctgatcattctgtaaaatcctgaacaatatctgccctggtgacaatatttttcttgtttgatggcagAACAGTGAAGCCATGGTTTCTATAGACATGCCTGCTGGCCCTTCAGAAGTATTAGTGATAGCGGATAAATATGCAAACCCAGTTCATGTTGCTGCTGATT
species | Oryza sativa |
transcript | LOC_Os01g13190.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATGATTCTTCAG AACAGTGAAGCCATGGTTTCTATAGACATGCCTGCTGGCCCTT-AGAAGTAEST: gi|29685418|gb|CB681693.1|CB681693
genomic: TATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATGATTCTTCAGgttctattct ... ttgatggcagAACAGTGAAGCCATGGTTTCTATAGACATGCCTGCTGGCCCTTCAGAAGTA
EST: TATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATGATTCTTCAG AACAGTGAAGCCATGGTTTCTATAGACATGCCTGCTGGCCCTTCAGAAGTAEST: gi|58678012|gb|CK066699.1|CK066699
genomic: TATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATGATTCTTCAGgttctattct ... ttgatggcagAACAGTGAAGCCATGGTTTCTATAGACATGCCTGCTGGCCCTTCAGAAGTA
EST: TATTTGGACCTGGTAATCAGTATGTCACGGCTGCAAAAATGATTCTTCAG AACAGTGAAGCCATGGTTTCTATAGACATGCCTGCTGGCCCTTCAGAAGTAEST: gi|29683233|gb|CB679508.1|CB679508
genomic: TATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATGATTCTTCAGgttctattct ... ttgatggcagAACAGTGAAGCCATGGTTTCTATAGACATGCCTGCTGGCCCTTCAGAAGTA
EST: TATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATGATTCTTCAG AACAGTGAAGCCATGGTTTCTATAGACATGCCTGCTGGCCCTTCAGAAGTAEST: gi|87017573|gb|CI289706.1|CI289706
genomic: TATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATGATTCTTCAGgttctattct ... ttgatggcagAACAGTGAAGCCATGGTTTCTATAGACATGCCTGCTGGCCCTTCAGAAGTA
EST: TATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATGATTCTTCAG AACAGTGAAGCCATGGTTTCTATAGACATGCCTGCTGGCCCTTCAGAAGTAEST: gi|58666767|gb|CK055453.1|CK055453
genomic: TATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATGATTCTTCAGgttctattct ... ttgatggcagAACAGTGAAGCCATGGTTTCTATAGACATGCCTGCTGGCCCTTCAGAAGTA
EST: TATTTGGACCTGGTAATCAGTATGTCACGGCTGCAAAAATGATTCTTCAG AACAGTGAAGCCATGGTTTCTATAGACATGCCTGCTGGCCCTTCAGAAGTA
genomic: TATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATGATTCTTCAGgttctattct ... ttgatggcagAACAGTGAAGCCATGGTTTCTATAGACATGCCTGCTGGCCCTTCAGAAGTA
taaaatcctgaacaatatctgccctggtgacaatatttttcttgtttgatggcagAACAGTGAAGCCATGGTTTCTATAGACATGCCTGCTGGCCCTTCAGAAGTATTAGTGATAGCGGATAAATATGCAAACCCAGTTCATGTTGCTGCTGATT
gtttgat putative branch site (score: 17)
tatttttcttgttt CT-rich tract
aatatttttcttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctattctgatcattctgtaaaatcctgaacaatatctgccctggtgacaatatttttcttgtttgatggcagAACAGTGAAGCCATGGTTTCTATAGACATGCCTGCTGGCCCTTCAGAAGTATTAGTGATAGCGGATAAATATGCAAACCCAGTTCATGTTGCTGCTGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT