1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gcatgatccccaatcctgttcatttatttatcggaagttctaaaatattgtagatttgctgatcttggcacttgtatgttcagGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGCTTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAA
species | Oryza sativa |
transcript | LOC_Os01g11120.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAG GGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCEST: gi|29678319|gb|CB674594.1|CB674594
genomic: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGgcatgatccc ... gtatgttcagGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTC
EST: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAG GGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCEST: gi|58685262|gb|CK073949.1|CK073949
genomic: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGgcatgatccc ... gtatgttcagGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTC
EST: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAG GGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCEST: gi|89167533|gb|CI108934.1|CI108934
genomic: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGgcatgatccc ... gtatgttcagGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTC
EST: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAG GGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCEST: gi|86483597|gb|CI126230.1|CI126230
genomic: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGgcatgatccc ... gtatgttcagGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTC
EST: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAG GGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCEST: gi|88851137|gb|CI373895.1|CI373895
genomic: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGgcatgatccc ... gtatgttcagGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTC
EST: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAG GGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCEST: gi|88996853|gb|CI389519.1|CI389519
genomic: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGgcatgatccc ... gtatgttcagGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTC
EST: GATTTTGGGTACACTGCCTGTCAG GGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCEST: gi|88268986|gb|CI380284.1|CI380284
genomic: GATTTTGGGTACACTGCCTGTCAGgcatgatccc ... gtatgttcagGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTC
EST: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAG GGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCEST: gi|86427633|gb|CI072730.1|CI072730
genomic: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGgcatgatccc ... gtatgttcagGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTC
EST: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAG GGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCEST: gi|89182435|gb|CI113804.1|CI113804
genomic: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGgcatgatccc ... gtatgttcagGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTC
EST: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAG GGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCEST: gi|58682423|gb|CK071110.1|CK071110
genomic: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGgcatgatccc ... gtatgttcagGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTC
EST: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAG GGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTC
genomic: ATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGgcatgatccc ... gtatgttcagGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTC
tatcggaagttctaaaatattgtagatttgctgatcttggcacttgtatgttcagGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGCTTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAA
taaaatattgtagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgatccccaatcctgttcatttatttatcggaagttctaaaatattgtagatttgctgatcttggcacttgtatgttcagGGTGAGCCCTTCTAAGACACCGGTGAAGCCACGTTTAAATCGAGTGGCGTCGAACTGACCGCTTGAGCCAAGCTGGATTGTTTACGGGAAGATCGCTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA