1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtgcaattgcatctttagttatttgaagctttgtaatgtgagggtattgaatgcatattgtgctttaacaatttaagctttgcccaccaatcccgacagGTCAATATTCCACGTGATCTAATGGTAAAACAATACCCCCACTTCATGGACCGCAGTCCTTCGTACCATTCGTCGTCCATACTTGGAAAAATCTATGATA
species | Oryza sativa |
transcript | LOC_Os01g10140.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCTTTGGATGCTCCAAAGATGGGGAACAA- GTCAATATTCCACGTGATCTAATGGTAAAACAATACCCCCACTTCATGGACEST: gi|2311470|gb|C27625.1|C27625
genomic: GCTTTGGATGCTCCAAAGATGGGGAACAAGgttaacttca ... atcccgacagGTCAATATTCCACGTGATCTAATGGTAAAACAATACCCCCACTTCATGGAC
EST: TAGTTGACCTTTATTATTTGGCTTTGGATGCTCCAAAGATGGGGAACAAG GTCAATATTCCACGTGATCTAATGGTAAAACAATACCCCCACTTCATGGACEST: gi|88363324|gb|CI643182.1|CI643182
genomic: TAGTTGACCTTTATTATTTGGCTTTGGATGCTCCAAAGATGGGGAACAAGgttaacttca ... atcccgacagGTCAATATTCCACGTGATCTAATGGTAAAACAATACCCCCACTTCATGGAC
EST: TAGTTGACCTTTATTATTTGGCTTTGGATGCTCCAAAGATGGGGAACAAG GTCAATATTCCACGTGATCTAATGGTAAAACAATACCCCCACTTCATG
genomic: TAGTTGACCTTTATTATTTGGCTTTGGATGCTCCAAAGATGGGGAACAAGgttaacttca ... atcccgacagGTCAATATTCCACGTGATCTAATGGTAAAACAATACCCCCACTTCATG
tattgaatgcatattgtgctttaacaatttaagctttgcccaccaatcccgacagGTCAATATTCCACGTGATCTAATGGTAAAACAATACCCCCACTTCATGGACCGCAGTCCTTCGTACCATTCGTCGTCCATACTTGGAAAAATCTATGATA
ctttaac putative branch site (score: 3)
tttaacaatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgcaattgcatctttagttatttgaagctttgtaatgtgagggtattgaatgcatattgtgctttaacaatttaagctttgcccaccaatcccgacagGTCAATATTCCACGTGATCTAATGGTAAAACAATACCCCCACTTCATGGACCGCAGTCCTTCGTACCATTCGTCGTCCATACTTGGAAAAATCTATGATA
tgtgcaa
- - - - tgcatct
- - - - - - - - - - - - tgaagct
- - - - - - - - - - - - - - - - tgtaatg
- - - - - - - - - - - - - - - - - - - - - - - - tgaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgtgc