1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttaaattatcaccatagcaatgcagtataagtaacttagtggctgcacaatctgtgttgatcagtgagtcttacaagaactgatgagctgactgctgcagATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTGCAAGATAACATACCTATCTGTGCTTCCATCATCGGGCAGCGCCTGGCGC
species | Oryza sativa |
transcript | LOC_Os01g08270.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATAC ATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTGEST: gi|25778100|gb|CA752852.1|CA752852
genomic: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATACgtaagtttgc ... actgctgcagATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTG
EST: TCTTCTCATTCTCGAAGGCTTACGGAATGGTGGGCTGGCGTGTAGGATAC ATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTGEST: gi|84117682|gb|CD151449.1|CD151449
genomic: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATACgtaagtttgc ... actgctgcagATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTG
EST: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAAGATAC ATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTGEST: gi|58695451|gb|CK084138.1|CK084138
genomic: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATACgtaagtttgc ... actgctgcagATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTG
EST: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATAC ATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTGEST: gi|66913374|gb|CX100222.1|CX100222
genomic: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATACgtaagtttgc ... actgctgcagATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTG
EST: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAAGATAC ATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTGEST: gi|58690593|gb|CK079280.1|CK079280
genomic: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATACgtaagtttgc ... actgctgcagATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTG
EST: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATAC ATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTG
genomic: TCTTCTCATTCTCGAAGGCTTACGGAATGATGGGCTGGCGTGTAGGATACgtaagtttgc ... actgctgcagATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTG
cacaatctgtgttgatcagtgagtcttacaagaactgatgagctgactgctgcagATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTGCAAGATAACATACCTATCTGTGCTTCCATCATCGGGCAGCGCCTGGCGC
agctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaattatcaccatagcaatgcagtataagtaacttagtggctgcacaatctgtgttgatcagtgagtcttacaagaactgatgagctgactgctgcagATTGCCCACCCAAACGAAGCTGACGGTCTTCATGCACAGCTGCTCAAAGTGCAAGATAACATACCTATCTGTGCTTCCATCATCGGGCAGCGCCTGGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA