1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctgctattaatacatgctcacatgttttctgaagctacctttttcaagataacttctacatctttggttttcgaccttaacacctcgtcattatatgtagTAGAAGATAGCAGCTATACAGCAGCACCAGCAAAGCAGCAATCAGCAACAGCTCCTTCAGCATTCTTTACTTAGCCAGCAACCACCAATCTCTAATCACC
species | Oryza sativa |
transcript | LOC_Os01g08190.5 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
aagataacttctacatctttggttttcgaccttaacacctcgtcattatatgtagTAGAAGATAGCAGCTATACAGCAGCACCAGCAAAGCAGCAATCAGCAACAGCTCCTTCAGCATTCTTTACTTAGCCAGCAACCACCAATCTCTAATCACC
ccttaac putative branch site (score: 1)
attatatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgctattaatacatgctcacatgttttctgaagctacctttttcaagataacttctacatctttggttttcgaccttaacacctcgtcattatatgtagTAGAAGATAGCAGCTATACAGCAGCACCAGCAAAGCAGCAATCAGCAACAGCTCCTTCAGCATTCTTTACTTAGCCAGCAACCACCAATCTCTAATCACC
-tgctatt
- - - - - tacatgc
- - - - - - - - - -acatgtt
- - - - - - - - - - - - - - ctgaagc
- - - - - - - - - - - - - - - - - - - - - - caagataa