1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaaaggatagaatttgatactcttttatgtgttataatatcttcctattctaattatatctactctctgcagGATGGTATCACCCCCTTTCGTTTGTCATGGACAGATTATATTTTAACTTCCCGCTACCCAACGTACTTGCGTGCCATTCAAAAAAGTTTGGAACCATACA
species | Oryza sativa |
transcript | LOC_Os01g05530.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGATTTTATGAGGAATTCCGATGTTCATATACCTGAAAAGGCATTAAAG GATGGTATCACCCCCTTTCGTTTGTCATGGACAGATTATATTTTAACTTCCEST: gi|89185066|gb|CI049612.1|CI049612
genomic: TTGATTTTATGAGGAATTCCGATGTTCATATACCTGAAAAGGCATTAAAGgtaaaaggat ... ctctctgcagGATGGTATCACCCCCTTTCGTTTGTCATGGACAGATTATATTTTAACTTCC
EST: TTGATTTTATGAGGAATTCCGATGTTCATATACCTGAAAAGGCATTAAAG GATGGTATCACCCCCTTTCGTTTGTCATGGACAGATTATATTTTAACTTCCEST: gi|29628348|gb|CB633359.1|CB633359
genomic: TTGATTTTATGAGGAATTCCGATGTTCATATACCTGAAAAGGCATTAAAGgtaaaaggat ... ctctctgcagGATGGTATCACCCCCTTTCGTTTGTCATGGACAGATTATATTTTAACTTCC
EST: TTGATTTTATGAGGAATTCCGATGTTCATATACCTGAAAAGGCATTAAAG GATGGTATCACCCCCTTTCGTTTGTCATGGACAGATTATATTTTAACTTCCEST: gi|88292005|gb|CI532597.1|CI532597
genomic: TTGATTTTATGAGGAATTCCGATGTTCATATACCTGAAAAGGCATTAAAGgtaaaaggat ... ctctctgcagGATGGTATCACCCCCTTTCGTTTGTCATGGACAGATTATATTTTAACTTCC
EST: TTGATTTTATGAGGAATTCCGATGTTCATATACCTGAAAAGGCATTAAAG GATGGTATCACCCCCTTTCGTTTGTCATGGACAGATTATATTTTAACTTCCEST: gi|89177341|gb|CI250790.1|CI250790
genomic: TTGATTTTATGAGGAATTCCGATGTTCATATACCTGAAAAGGCATTAAAGgtaaaaggat ... ctctctgcagGATGGTATCACCCCCTTTCGTTTGTCATGGACAGATTATATTTTAACTTCC
EST: TTGATTTTATGAGGAATTCCGATGTTCATATACCTGAAAAGGCATTAAAG GATGGTATCACCCCCTTTCGTTTGTCATGGACAGATTATATTTTAACTTCC
genomic: TTGATTTTATGAGGAATTCCGATGTTCATATACCTGAAAAGGCATTAAAGgtaaaaggat ... ctctctgcagGATGGTATCACCCCCTTTCGTTTGTCATGGACAGATTATATTTTAACTTCC
tactcttttatgtgttataatatcttcctattctaattatatctactctctgcagGATGGTATCACCCCCTTTCGTTTGTCATGGACAGATTATATTTTAACTTCCCGCTACCCAACGTACTTGCGTGCCATTCAAAAAAGTTTGGAACCATACA
ttctaat putative branch site (score: 12)
tctactctct putative PPT
ttataatatcttccta TA-rich tract