1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttacctctgttcatctttttaacgtaggacaatgttcagtttagatttgcagaactttgatgtttgctttaatttgttgttaatacagATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAGAGATGACGATTGTGCCATATGTGCCAGATACAGTTACCTACTGTGGCGA
species | Oryza sativa |
transcript | LOC_Os01g05510.5 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CACAGTCAAAATATCAG ATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAGEST: gi|88843164|gb|CI372064.1|CI372064
genomic: CACAGTCAAAATATCAGgtttacctct ... gttaatacagATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAG
EST: TTGCACAGTCAAAATATCAG ATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAGEST: gi|86873537|gb|CI329915.1|CI329915
genomic: TTGCACAGTCAAAATATCAGgtttacctct ... gttaatacagATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAG
EST: AGTCAAAATATCAG ATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAGEST: gi|86479352|gb|CI121985.1|CI121985
genomic: AGTCAAAATATCAGgtttacctct ... gttaatacagATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAG
EST: AGCTGCCTATCTCATGTCCCAGTCTTCTTTGCACAGTCAAAATATCAG ATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAG
genomic: AGCTGCCTATCTCATGTCCCAGTCTTCTTTGCACAGTCAAAATATCAGgtttacctct ... gttaatacagATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAG
gttcagtttagatttgcagaactttgatgtttgctttaatttgttgttaatacagATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAGAGATGACGATTGTGCCATATGTGCCAGATACAGTTACCTACTGTGGCGA
tgttaat putative branch site (score: 1)
tttaatttgttgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttacctctgttcatctttttaacgtaggacaatgttcagtttagatttgcagaactttgatgtttgctttaatttgttgttaatacagATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAGAGATGACGATTGTGCCATATGTGCCAGATACAGTTACCTACTGTGGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG