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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcaaccttcttttaatatttcatctgctctcttgctctctgtactaaattttctactctgtagAGCTGCCTATCTCATGTCCCAGTCTTCTTTGCACAGTCAAAATATCAG

Basic information

species Oryza sativa
transcript LOC_Os01g05510.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86828075|gb|CI274957.1|CI274957
EST:     CACGTACATTCGTTTGAATATAGAG                         AGCTGCCTATCTCATGTCCCAGTCTTCTTTGCACAGTCAAAATATCAG
genomic: CACGTACATTCGTTTGAATATAGAGgtacgcaacc ... tactctgtagAGCTGCCTATCTCATGTCCCAGTCTTCTTTGCACAGTCAAAATATCAG
EST: gi|29640997|gb|CB646004.1|CB646004
EST:     CACGTACATTCGTTTGAATATAGAG                         AGCTGCCTATCTCATGTCCCAGTCTTCTTTGCACAGTCAAAATATCAG
genomic: CACGTACATTCGTTTGAATATAGAGgtacgcaacc ... tactctgtagAGCTGCCTATCTCATGTCCCAGTCTTCTTTGCACAGTCAAAATATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttaatatttcatctgctctcttgctctctgtactaaattttctactctgtagAGCTGCCTATCTCATGTCCCAGTCTTCTTTGCACAGTCAAAATATCAG
                                 tactaaa  putative branch site (score: 1)
 ttttctactct  CT-rich tract
 tactaaattttcta  TA-rich tract