1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtaccaattctattcctgccacacaatcttcaattattcagctctgatgtgagacaacatatgcaatcatttgctcttgcagAGGATCACCATGCCTGAGATAAAGAACCACCCATGGTTCATGAAGAACATCCCGGCTGACCTCATGGATGATGGCATGGTTAGCAATCAGTACGAGGAGC
species | Oryza sativa |
transcript | LOC_Os12g39630.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGGAGTGCCGCGATCTCATTACGAGGATTTTTGTTGGCAACCCAGCTAGT AGGATCCCCCATGCCTGAGATAAAGAACCACCCATGGTTCATGAAGAACATEST: gi|88668093|gb|CI722832.1|CI722832
genomic: CGGAGTGCCGCGATCTCATTACGAGGATTTTTGTTGGCAACCCAGCTAGTgtgagtacca ... gctcttgcagAGGAT-CACCATGCCTGAGATAAAGAACCACCCATGGTTCATGAAGAACAT
EST: CGGAGTGCCGCGATCTCATTACGAGGATTTTTGTTGGCAACCCAGCTAGT AGGATCACCATGCCTGAGATAAAGAACCACCCATGGTTCATGAAGAACATCEST: gi|8336678|gb|BE041017.1|BE041017
genomic: CGGAGTGCCGCGATCTCATTACGAGGATTTTTGTTGGCAACCCAGCTAGTgtgagtacca ... gctcttgcagAGGATCACCATGCCTGAGATAAAGAACCACCCATGGTTCATGAAGAACATC
EST: CGATCTCATTACGAGGGTTTTTGTTGGCAACCCAGCTAGT AGGATCACCAACCCTGA-ATAAAGAACCACCCAT-GTTCAAT-AAGAACAT
genomic: CGATCTCATTACGAGGATTTTTGTTGGCAACCCAGCTAGTgtgagtacca ... gctcttgcagAGGATCACCATGCCTGAGATAAAGAACCACCCATGGTTC-ATGAAGAACAT
cttcaattattcagctctgatgtgagacaacatatgcaatcatttgctcttgcagAGGATCACCATGCCTGAGATAAAGAACCACCCATGGTTCATGAAGAACATCCCGGCTGACCTCATGGATGATGGCATGGTTAGCAATCAGTACGAGGAGC
ctctgat putative branch site (score: 2)
tttgctctt putative PPT
attattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaccaattctattcctgccacacaatcttcaattattcagctctgatgtgagacaacatatgcaatcatttgctcttgcagAGGATCACCATGCCTGAGATAAAGAACCACCCATGGTTCATGAAGAACATCCCGGCTGACCTCATGGATGATGGCATGGTTAGCAATCAGTACGAGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG