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...tttggtgcgttctggcgggagattggattcggcgtgacaattaataagacgtatagtactggttatgcccaatgatttattcaatgccatattttggcagGATGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGTCGTTTTGGGGATGAACTGGAGGCTGAAGCACTAGCTGAGAGGCGCATAG
species | Oryza sativa |
transcript | LOC_Os12g38970.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCATTAGATGAG GATGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGTEST: gi|38478397|gb|CF962530.1|CF962530
genomic: GCATTAGATGAGgtgggtttct ... attttggcagGATGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGT
EST: GGCAAAGAAGGCAGCTTTCTCCCGGATTTTTGGAAGATGCATTAGATGAG GATGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGTEST: gi|29623852|gb|CB628863.1|CB628863
genomic: GGCAAAGAAGGCAGCTTTCTCCCGGATTTTTGGAAGATGCATTAGATGAGgtgggtttct ... attttggcagGATGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGT
EST: GGCAAAGAAGGCAGCTTTCTCCCGGATTTTTGGAAGATGCATTAGATGAG GATGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGT
genomic: GGCAAAGAAGGCAGCTTTCTCCCGGATTTTTGGAAGATGCATTAGATGAGgtgggtttct ... attttggcagGATGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGT
aagacgtatagtactggttatgcccaatgatttattcaatgccatattttggcagGATGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGTCGTTTTGGGGATGAACTGGAGGCTGAAGCACTAGCTGAGAGGCGCATAG
aatgatttattcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggtgcgttctggcgggagattggattcggcgtgacaattaataagacgtatagtactggttatgcccaatgatttattcaatgccatattttggcagGATGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGTCGTTTTGGGGATGAACTGGAGGCTGAAGCACTAGCTGAGAGGCGCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
-ttggtgc
- - - - -ttctggc
- - - - - - - - - - - - - - -cggcgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgcca