1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cgaaggaacatttttaattattacatgaaacagacatggcagtctcatcggtagtgacatttggtctcgtaactcttctgttgtttttgtgctatggtagATCAACAGATGATATTCCTATTTCATCCGCGACAAAAGATGACAGACAAATAAGGGCGAACATTGCTGCCTCTTTTCAG
species | Oryza sativa |
transcript | LOC_Os12g29990.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATGCTGGTCTGAAGACTCAAGTTCGATTGGCTATTGAAGGCAGAAACAT ATCAACAGATGATATTCCTATTTCATCCGCGACAAAAGATGACAGACAAATEST: gi|29616287|gb|CB621299.1|CB621299
genomic: TATGCTGGTCTGAAGACTCAAGTTCGATTGGCTATTGAATCCAGAAACATgtatggctgt ... gctatggtagATCAACAGATGATATTCCTATTTCATCCGCGACAAAAGATGACAGACAAAT
EST: TGCTGGTCTGAAGACTCAAGTCCGATTGGCTATTTGA-TCCCAGAA-CAT ATCAACAGATGATATTCCTATTTCATCCGCGACAAAAGATG
genomic: TGCTGGTCTGAAGACTCAAGTTCGATTGGCTATT-GAATCC-AGAAACATgtatggctgt ... gctatggtagATCAACAGATGATATTCCTATTTCATCCGCGACAAAAGATG
catcggtagtgacatttggtctcgtaactcttctgttgtttttgtgctatggtagATCAACAGATGATATTCCTATTTCATCCGCGACAAAAGATGACAGACAAATAAGGGCGAACATTGCTGCCTCTTTTCAG
tcgtaac putative branch site (score: 2)
ttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgaaggaacatttttaattattacatgaaacagacatggcagtctcatcggtagtgacatttggtctcgtaactcttctgttgtttttgtgctatggtagATCAACAGATGATATTCCTATTTCATCCGCGACAAAAGATGACAGACAAATAAGGGCGAACATTGCTGCCTCTTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC