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gtaataaaccgccgtgttacttcatctgattaaagatatcattgaatcaacgctgttctccttatgatataccttgttcttgtgcagTCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGCAAAACTATCAAGAAAGTGACCCCAGCAAATACCAAATTGCCCAAAAGTT
species | Oryza sativa |
transcript | LOC_Os12g15470.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG TCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGCEST: gi|117240321|gb|CT842747.1|CT842747
genomic: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaacc ... tcttgtgcagTCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
EST: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG TCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGCEST: gi|29659836|gb|CB656111.1|CB656111
genomic: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaacc ... tcttgtgcagTCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
EST: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG TCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGCEST: gi|33684071|gb|CF312310.1|CF312310
genomic: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaacc ... tcttgtgcagTCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
EST: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG TCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGCEST: gi|29668081|gb|CB664356.1|CB664356
genomic: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaacc ... tcttgtgcagTCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
EST: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG TCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGCEST: gi|29661783|gb|CB658058.1|CB658058
genomic: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaacc ... tcttgtgcagTCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
EST: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG TCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGCEST: gi|33801783|gb|CF326764.1|CF326764
genomic: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaacc ... tcttgtgcagTCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
EST: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACANAGTCGATACG TCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGCEST: gi|88399116|gb|CI603783.1|CI603783
genomic: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaacc ... tcttgtgcagTCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
EST: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG TCAATTAATGACCTAAEST: gi|86905526|gb|CI285489.1|CI285489
genomic: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaacc ... tcttgtgcagTCAATTAATGACCTAA
EST: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACG TCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGCEST: gi|4715276|gb|AU056393.1|AU056393
genomic: GGAATACTACCACTGATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaacc ... tcttgtgcagTCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGC
EST: GAATACTACCACTGGATAAATGTGAAAATGCACTCTACAAAGTCGATACG TCAATTAATGA
genomic: GAATACTACCACTG-ATAAATGTGAAAATGCACTCTACAAAGTCGATACGgtaataaacc ... tcttgtgcagTCAATTAATGA
aagatatcattgaatcaacgctgttctccttatgatataccttgttcttgtgcagTCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGCAAAACTATCAAGAAAGTGACCCCAGCAAATACCAAATTGCCCAAAAGTT
ccttgttctt CT-rich tract
ttatgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataaaccgccgtgttacttcatctgattaaagatatcattgaatcaacgctgttctccttatgatataccttgttcttgtgcagTCAATTAATGACCTAAATATTTATGACATTCTTGAGCCATGCTACCACAGCAAAACTATCAAGAAAGTGACCCCAGCAAATACCAAATTGCCCAAAAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA