1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...ccttctttctgataatttgtgagtaaaggaatgcagtatatctgtatgttttaaggattcatttttttcaacaaagttatttatgctacattaattgcagTTCAACCGCGGAACCAGTGCTATGCAACATTATGTTGCAACACGGCCAATGTTTATTGATGTGGATATTATGAGCATTGATATTCAAGTTGTTCTTGGTG
species | Oryza sativa |
transcript | LOC_Os12g13590.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGAGGCGGGAGATGTCTACGATGGCAGAATGTGCTAAAATTTTGTCACAG TTCAACCGCGGAACCAGTGCTATGCAACATTATGTTGCAACACGEST: gi|29632378|gb|CB637387.1|CB637387
genomic: AGAGGCGGGAGATGTCTACGATGGCAGAATGTGCTAAAATTTTGTCACAGgtgtgtattc ... ttaattgcagTTCAACCGCGGAACCAGTGCTATGCAACATTATGTTGCAACACG
EST: AGAGGCGGGAGATGTCTACGATGGCAGAATGTGCTAAAATTTTGTCACAG TTCAACCGCGGAACCAGTGCTATGCAACATTATGTTGCAACACGGCCAATGEST: gi|29669744|gb|CB666019.1|CB666019
genomic: AGAGGCGGGAGATGTCTACGATGGCAGAATGTGCTAAAATTTTGTCACAGgtgtgtattc ... ttaattgcagTTCAACCGCGGAACCAGTGCTATGCAACATTATGTTGCAACACGGCCAATG
EST: ACAGGCGGGAGATGTCTACGATGGCAGAATGTGCTAAAATTTTGTCACAG TTCAACCGCGGAACCAGTGCTATGCAACATTATGTTGCAACACGGCCAATGEST: gi|58677372|gb|CK066059.1|CK066059
genomic: AGAGGCGGGAGATGTCTACGATGGCAGAATGTGCTAAAATTTTGTCACAGgtgtgtattc ... ttaattgcagTTCAACCGCGGAACCAGTGCTATGCAACATTATGTTGCAACACGGCCAATG
EST: AGAGGCGGGAGATGTCTACGATGGCAGAATGTGCTAAAATTTTGTCACAG TTCAACCGCGGAACCAGTGCTATGCAACATTATGTTGCAACACGGCCAATG
genomic: AGAGGCGGGAGATGTCTACGATGGCAGAATGTGCTAAAATTTTGTCACAGgtgtgtattc ... ttaattgcagTTCAACCGCGGAACCAGTGCTATGCAACATTATGTTGCAACACGGCCAATG
atgttttaaggattcatttttttcaacaaagttatttatgctacattaattgcagTTCAACCGCGGAACCAGTGCTATGCAACATTATGTTGCAACACGGCCAATGTTTATTGATGTGGATATTATGAGCATTGATATTCAAGTTGTTCTTGGTG
cattaat putative branch site (score: 3)
attcatttttttcaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttctttctgataatttgtgagtaaaggaatgcagtatatctgtatgttttaaggattcatttttttcaacaaagttatttatgctacattaattgcagTTCAACCGCGGAACCAGTGCTATGCAACATTATGTTGCAACACGGCCAATGTTTATTGATGTGGATATTATGAGCATTGATATTCAAGTTGTTCTTGGTG
- - ctttctg
- - - - - - - - - - - - - - gaatgca
- - - - - - - - - - - - - - - - - - - - -ctgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctaca