1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aggtcctggatatttctcattgtgtaactatactccttttactagctaaaggaataaaaagtatctgaaatcttatctttgtacttttccttttgtgcagAAACAAACAAACAGATTCTACCTGGCTCTCTGTGCCTTAACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAG
species | Oryza sativa |
transcript | LOC_Os12g13130.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGCCCACACATGCAAGAATGGCTCTAAACCTTTCCCCAAAGGTGGCAGG AAACAAACAAACAGATTCTACCTGGCTCTCTGTGCCTTAACAATAGTACTTEST: gi|88222581|gb|CI222537.1|CI222537
genomic: ATGCCCACACATGCAAGAATGGCTCTAAACCTTTCCCCAAAGGTGGCAGGgtgagagaat ... ttttgtgcagAAACAAACAAACAGATTCTACCTGGCTCTCTGTGCCTTAACAATAGTACTT
EST: GCAAGAATGGCTCTAAACCTTTCCCCAAAGGTGGCAGG AAACAAACAAACAGATTCTACCTGGCTCTCTGTGCCTTAACAATAGTACTTEST: gi|88688437|gb|CI732013.1|CI732013
genomic: GCAAGAATGGCTCTAAACCTTTCCCCAAAGGTGGCAGGgtgagagaat ... ttttgtgcagAAACAAACAAACAGATTCTACCTGGCTCTCTGTGCCTTAACAATAGTACTT
EST: ATGCCCACACATGCAAGAATGGCTCTAAACCTTTCCCCAAAGGTGGCAGG AAACAAACAAACAGATTCTACCTGGCTCTCTGTGCCTTAACAATAGTACTTEST: gi|29645805|gb|CB650812.1|CB650812
genomic: ATGCCCACACATGCAAGAATGGCTCTAAACCTTTCCCCAAAGGTGGCAGGgtgagagaat ... ttttgtgcagAAACAAACAAACAGATTCTACCTGGCTCTCTGTGCCTTAACAATAGTACTT
EST: ATGCCCACACATGCAAGAATGGCTCTAAACCTTTCCCCAAAGGTGGCAGG AAACAAACAAACAGATTCTACCTGGCTCTCTGTGCCTTAACAATAGTACTTEST: gi|29645769|gb|CB650776.1|CB650776
genomic: ATGCCCACACATGCAAGAATGGCTCTAAACCTTTCCCCAAAGGTGGCAGGgtgagagaat ... ttttgtgcagAAACAAACAAACAGATTCTACCTGGCTCTCTGTGCCTTAACAATAGTACTT
EST: ATGCCCACACATGCAAGAATGGCTCTAAACCTTTCCCCAAAGGTGGCAGG AAACAAACAAACAGATTCTACCTGGCTCTCTGTGCCTTAACAATAGTACTT
genomic: ATGCCCACACATGCAAGAATGGCTCTAAACCTTTCCCCAAAGGTGGCAGGgtgagagaat ... ttttgtgcagAAACAAACAAACAGATTCTACCTGGCTCTCTGTGCCTTAACAATAGTACTT
ctaaaggaataaaaagtatctgaaatcttatctttgtacttttccttttgtgcagAAACAAACAAACAGATTCTACCTGGCTCTCTGTGCCTTAACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAG
agctaaa putative branch site (score: 3)
tcttatctttgtactt putative PPT
aataaaaagtatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggtcctggatatttctcattgtgtaactatactccttttactagctaaaggaataaaaagtatctgaaatcttatctttgtacttttccttttgtgcagAAACAAACAAACAGATTCTACCTGGCTCTCTGTGCCTTAACAATAGTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAG
-ggtcctg
- - - - - - - - - - - - - - - - - - - - - -agctaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -gaataaa