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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtatctatttccagccatatacattatctttgctgttagattaaaggatgctagcacattttgctcactgttcttctgatctttcaatcttcaactcagGGAAAGATGAGTTCTCAATCTTTTCGCCCTCCAAAACCTGAAGATATTGCCACTATTTGTTACACTAGTGGCACTACTGGCACACCGAAG

Basic information

species Oryza sativa
transcript LOC_Os12g04990.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58667918|gb|CK056604.1|CK056604
EST:     CAACAGCTACTGGAGTGGAAATTATAACTTACTCCAGACTACTTAGCCAG                         TGAAAGATGAGTTCTCAATCTTTTCGCCCTCCAAAACCTGAAGATATTGCC
genomic: CAACAGCTACTGGAGTGGAAATTATAACTTACTCCAGACTACTTAGCCAGgtgagtttgc ... ttcaactcagGGAAAGATGAGTTCTCAATCTTTTCGCCCTCCAAAACCTGAAGATATTGCC
EST: gi|33675569|gb|CF303808.1|CF303808
EST:     CAACAGCTACTGGAGTGGAAATTATAACTTACTCCAGACTACTTAGCCAG                         GGAAAGATGAGTTCTCAATCTTTTCGCCCTCCAAAACCTGAAGATATTGCC
genomic: CAACAGCTACTGGAGTGGAAATTATAACTTACTCCAGACTACTTAGCCAGgtgagtttgc ... ttcaactcagGGAAAGATGAGTTCTCAATCTTTTCGCCCTCCAAAACCTGAAGATATTGCC
EST: gi|58694148|gb|CK082835.1|CK082835
EST:     CAACAGCTACTGGAGTGGAAATTATAACTTACTCCAGACTACTTAGCCAG                         GGAAAGATGAGTTCTCAATCTTTTCGCCCTCCAAAACCTGAAGATATTGCC
genomic: CAACAGCTACTGGAGTGGAAATTATAACTTACTCCAGACTACTTAGCCAGgtgagtttgc ... ttcaactcagGGAAAGATGAGTTCTCAATCTTTTCGCCCTCCAAAACCTGAAGATATTGCC
EST: gi|58689916|gb|CK078603.1|CK078603
EST:     CAACAGCTACTGGAGTGGAAATTATAACTTACTCCAGACTACTTAGCCAG                         GGAAAGATGAGTTCTCAATCTTTTCGCCCTCCAAAACCTGAAGATATTGCC
genomic: CAACAGCTACTGGAGTGGAAATTATAACTTACTCCAGACTACTTAGCCAGgtgagtttgc ... ttcaactcagGGAAAGATGAGTTCTCAATCTTTTCGCCCTCCAAAACCTGAAGATATTGCC
EST: gi|58666789|gb|CK055475.1|CK055475
EST:     CAACAGCTACTGGAGTGGAAATTATAACTTACTCCAGACTACTTAGCCAG                         GGAAAGATGAGTTCTCAATCTTTTCGCCCTCCAAAACCTGAAGATATTGCC
genomic: CAACAGCTACTGGAGTGGAAATTATAACTTACTCCAGACTACTTAGCCAGgtgagtttgc ... ttcaactcagGGAAAGATGAGTTCTCAATCTTTTCGCCCTCCAAAACCTGAAGATATTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggatgctagcacattttgctcactgttcttctgatctttcaatcttcaactcagGGAAAGATGAGTTCTCAATCTTTTCGCCCTCCAAAACCTGAAGATATTGCCACTATTTGTTACACTAGTGGCACTACTGGCACACCGAAG
                                           tcttc  CT-rich tract
           acatttt  TA-rich tract