1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcaaccacacttcacatcctgccaatgccaatgaacaaaccatcttactgaaaaacagacacagaacaaccagaaatgctctgttggtctaacatttccttttgtattaccagCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGGACGTTGTGTACA
species | Oryza sativa |
transcript | LOC_Os12g04020.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAA CTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCAEST: gi|38472231|gb|CF956362.1|CF956362
genomic: TCCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAAgtaagcaacc ... gtattaccagCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCA
EST: TCCATGACACATACGGCCAAGCCCTTGCCAACATATTGGTCTCTCTCCAA CTGGGGATCAACATAGTGGACTGATCAGTGTCAGGACTGGGAGGCTGCCAAEST: gi|88906198|gb|CI375270.1|CI375270
genomic: TCCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAAgtaagcaacc ... gtattaccagCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCA
EST: TCCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAA CTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCA
genomic: TCCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAAgtaagcaacc ... gtattaccagCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCA
acacagaacaaccagaaatgctctgttggtctaacatttccttttgtattaccagCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGGACGTTGTGTACA
gtctaac putative branch site (score: 15)
tttccttttgtatt CT-rich tract
ttttgtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaaccacacttcacatcctgccaatgccaatgaacaaaccatcttactgaaaaacagacacagaacaaccagaaatgctctgttggtctaacatttccttttgtattaccagCTGGGGATCAACATAGTGGACTCATCAGTGTCAGGACTGGGAGGCTGCCCATATGCAAAGGGCGCCACCGGCAATGTCGCGACGGAGGACGTTGTGTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA