1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcctcctaataataatttcttgtatgtgttcgatcttgattaatctgaagaacaaacaaactgtaactggcaattgttgtatgtgtaaatttggttttgcagTCAGAGAAGCAGAACATCTGGACTGGAAAACACGGCTACGAATCATAATGGGAGTAGCCTACTGCCTGGAGCACATGAGCCAGCTAGATCCTCCTCCTCT
species | Oryza sativa |
transcript | LOC_Os12g01510.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATGGTGTTCGAGTATGCTCCATGTGGTTCCCTCTTTGAGCATTTGCATA TCAGAGAAGCAGAACATCTGGACTGGAAAACACGGCTACGAATCATAATGGEST: gi|58587574|gb|CF985882.1|CF985882
genomic: GATGGTGTTCGAGTATGCTCCATGTGGTTCCCTCTTTGAGCATTTGCATAgtaagcctcc ... ggttttgcagTCAGAGAAGCAGAACATCTGGACTGGAAAACACGGCTACGAATCATAATGG
EST: GATGGTGTTCGAGTATGCTCCATGTGGTTCCCTCTTTGAGCATTTGCATA TCAGAGAAGCAGAACATCTGGACGGGAAAACACGGCTACGAATCATAATGGEST: gi|58609301|gb|CK037334.1|CK037334
genomic: GATGGTGTTCGAGTATGCTCCATGTGGTTCCCTCTTTGAGCATTTGCATAgtaagcctcc ... ggttttgcagTCAGAGAAGCAGAACATCTGGACTGGAAAACACGGCTACGAATCATAATGG
EST: GATGGTGTTCGAGTATGCTCCATGTGGTTCCCTCTTTGAGCATTTGCATA TCAGAGAAGCAGAACATCTGGACTGGAAAACACGGCTACGAATCATAATGGEST: gi|29621673|gb|CB626684.1|CB626684
genomic: GATGGTGTTCGAGTATGCTCCATGTGGTTCCCTCTTTGAGCATTTGCATAgtaagcctcc ... ggttttgcagTCAGAGAAGCAGAACATCTGGACTGGAAAACACGGCTACGAATCATAATGG
EST: GATGGTGTTCGAGTATGCTCCATGTGGTTCCCTCTTTGAGCATTTGCATA TCAGAGAAGCAGAACATCTGGACTGGAAAACACGGCTACGAATCATAATGG
genomic: GATGGTGTTCGAGTATGCTCCATGTGGTTCCCTCTTTGAGCATTTGCATAgtaagcctcc ... ggttttgcagTCAGAGAAGCAGAACATCTGGACTGGAAAACACGGCTACGAATCATAATGG
aagaacaaacaaactgtaactggcaattgttgtatgtgtaaatttggttttgcagTCAGAGAAGCAGAACATCTGGACTGGAAAACACGGCTACGAATCATAATGGGAGTAGCCTACTGCCTGGAGCACATGAGCCAGCTAGATCCTCCTCCTCT
ctgtaac putative branch site (score: 13)
tgtaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcctcctaataataatttcttgtatgtgttcgatcttgattaatctgaagaacaaacaaactgtaactggcaattgttgtatgtgtaaatttggttttgcagTCAGAGAAGCAGAACATCTGGACTGGAAAACACGGCTACGAATCATAATGGGAGTAGCCTACTGCCTGGAGCACATGAGCCAGCTAGATCCTCCTCCTCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC