1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...ggactttcttgtattctaaaatggccatccgctgaccaacagtatctctcacactgcttcatcaactattttataattctgtgcttttactgacaaacagGTCGCAAAAGAACTGTCTGAAAGGGGTATTTTAGCAGATTATTATCATGCAGATATGGATGTTATTTCTCGTGAGAAAGTTCATATGCG
species | Oryza sativa |
transcript | LOC_Os11g48090.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATAATGAATCTGGGATTGTTTACTGCTTTTCTAGGAAGGAATGTGAACAG GTCGCAAAAGAACTGTCTGAAAGGGGTATTTTAGCAGATTATTATCATGCAEST: gi|58690628|gb|CK079315.1|CK079315
genomic: ATAATGAATCTGGGATTGTTTACTGCTTTTCTAGGAAGGAATGTGAACAGgttagtatag ... tgacaaacagGTCGCAAAAGAACTGTCTGAAAGGGGTATTTTAGCAGATTATTATCATGCA
EST: ATAATGAATCTGGGATTGTTTACTGCTTTTCTAGGAAGGAATGTGAACAG GTCGCAAAAGAACTGTCTGAAAGGGGTATTTTAGCAGATTATTATCATGCAEST: gi|29682976|gb|CB679251.1|CB679251
genomic: ATAATGAATCTGGGATTGTTTACTGCTTTTCTAGGAAGGAATGTGAACAGgttagtatag ... tgacaaacagGTCGCAAAAGAACTGTCTGAAAGGGGTATTTTAGCAGATTATTATCATGCA
EST: ATAATGAATCTGGGATTGTTTACTGCTTTTCTAGGAAGGAATGTGAACAG GTCGCAAAAGAACTGTCTGAAAGGGGTATTTTAGCAGATTATTATCATGCA
genomic: ATAATGAATCTGGGATTGTTTACTGCTTTTCTAGGAAGGAATGTGAACAGgttagtatag ... tgacaaacagGTCGCAAAAGAACTGTCTGAAAGGGGTATTTTAGCAGATTATTATCATGCA
ctctcacactgcttcatcaactattttataattctgtgcttttactgacaaacagGTCGCAAAAGAACTGTCTGAAAGGGGTATTTTAGCAGATTATTATCATGCAGATATGGATGTTATTTCTCGTGAGAAAGTTCATATGCG
tactgac putative branch site (score: 1)
cttttact CT-rich tract
ttcatcaactatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggactttcttgtattctaaaatggccatccgctgaccaacagtatctctcacactgcttcatcaactattttataattctgtgcttttactgacaaacagGTCGCAAAAGAACTGTCTGAAAGGGGTATTTTAGCAGATTATTATCATGCAGATATGGATGTTATTTCTCGTGAGAAAGTTCATATGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - tttcttg
- - - - - - - - - - - - - -tccgctg
- - - - - - - - - - - - - - - - - accaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctttt