1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaagctgatatctgaatctatattgttggataaaagtgcagggatgtacgcattattaatatcattgttttcccccttgtttttacttgaacagGTCCAGAAGCTGTTTGTGAGGAAACCTGGTAGTTGAAGATTATAACACATGGTTTTTGCCATCGTGGAAAAAGAGGATGCGTACATTTTTTTTTTCTTAA
species | Oryza sativa |
transcript | LOC_Os11g48040.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGCTAGACTGGGATCATGGAATGTGATAATGTTCTTGACACTGGAGCAT GTCCAGAACCTGTTTGTGAGGAAACCTGGTAGTTGAACATTAEST: gi|86412895|gb|CI067300.1|CI067300
genomic: TTGCTAGACTGGGATCATGGAATGTGATAATGTTCTTGACACTGGAGCAGgtaaagctga ... acttgaacagGTCCAGAAGCTGTTTGTGAGGAAACCTGGTAGTTGAAGATTA
EST: TTGCTAGACTGGGATCATGGAATGTGATAATGTTCTTGACACTGGAGCAG GTCCAGAAGCTGTTTGTGAGGAAACCTGGTAGTTGAAGATTATAACACATGEST: gi|88975591|gb|CI021673.1|CI021673
genomic: TTGCTAGACTGGGATCATGGAATGTGATAATGTTCTTGACACTGGAGCAGgtaaagctga ... acttgaacagGTCCAGAAGCTGTTTGTGAGGAAACCTGGTAGTTGAAGATTATAACACATG
EST: TTGCTAGACTGGGATCATGGAATGTGATAATGTTCTTGACACTGGAGCAG GTCCAGAAGCTGTTTGTGAGGAAACCTGGTAGTTGAAGATTATAACACATGEST: gi|88975293|gb|CI023544.1|CI023544
genomic: TTGCTAGACTGGGATCATGGAATGTGATAATGTTCTTGACACTGGAGCAGgtaaagctga ... acttgaacagGTCCAGAAGCTGTTTGTGAGGAAACCTGGTAGTTGAAGATTATAACACATG
EST: TTGCTAGACTGGGATCATGGAATGTGATAATGTTCTTGACACTGGAGCAG GTCCAGAAGCTGTTTGTGAGGAAACCTGGTAGTTGAAGATTATAACACATG
genomic: TTGCTAGACTGGGATCATGGAATGTGATAATGTTCTTGACACTGGAGCAGgtaaagctga ... acttgaacagGTCCAGAAGCTGTTTGTGAGGAAACCTGGTAGTTGAAGATTATAACACATG
agggatgtacgcattattaatatcattgttttcccccttgtttttacttgaacagGTCCAGAAGCTGTTTGTGAGGAAACCTGGTAGTTGAAGATTATAACACATGGTTTTTGCCATCGTGGAAAAAGAGGATGCGTACATTTTTTTTTTCTTAA
tattaat putative branch site (score: 59)
tcattgttttccccct CT-rich tract
attattaatatcattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagctgatatctgaatctatattgttggataaaagtgcagggatgtacgcattattaatatcattgttttcccccttgtttttacttgaacagGTCCAGAAGCTGTTTGTGAGGAAACCTGGTAGTTGAAGATTATAACACATGGTTTTTGCCATCGTGGAAAAAGAGGATGCGTACATTTTTTTTTTCTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG