1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgttctattcttttactctgaaattttggttccatgtccttttcacattgtcatgtgacatattgtcttgtatcctctgcagTGATGAGAGCCTTCTATTTCAAGCTCTCGGTTTAAATGATGAACTGCAGCGTGTTCTTCAGCGTCATGATGACATCGCAAAGGGAGTGCCTCCCGGTTCA
species | Oryza sativa |
transcript | LOC_Os11g09329.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGTGCCGATCTTATCAAGGTCGAGTCATGGACCTTGTTAGCAATACTGG TGATGAGAGCCTTCTATTTCAAGCTCTCGGTTTAAATGATGAACTGCAGCGEST: gi|58602718|gb|CK013246.1|CK013246
genomic: CAGTGCCGATCTTATCAAGGTCGAGTCATGGACCTTGTTAGCAATACTGGgtatgttcta ... tcctctgcagTGATGAGAGCCTTCTATTTCAAGCTCTCGGTTTAAATGATGAACTGCAGCG
EST: AGTGCCGAGCTGTATCAAGGTCGAGTCATGGACCTTGTTAGCAATACTGG TGATGAGAGCCTTCTATTTCAGGCTCTCGGTTTAAATGATGAATTGCAGCGEST: gi|38475873|gb|CF960006.1|CF960006
genomic: AGTGCCGATCT-TATCAAGGTCGAGTCATGGACCTTGTTAGCAATACTGGgtatgttcta ... tcctctgcagTGATGAGAGCCTTCTATTTCAAGCTCTCGGTTTAAATGATGAACTGCAGCG
EST: CAGTGCCGATCTTATCAAGGTCGAGTCATGGACCTTGTTAGCAATACTGG TGATGAGAGCCTTCTATTTCAGGCTCTCGGTTTAAATGATGAATTGCAGCGEST: gi|29635153|gb|CB640162.1|CB640162
genomic: CAGTGCCGATCTTATCAAGGTCGAGTCATGGACCTTGTTAGCAATACTGGgtatgttcta ... tcctctgcagTGATGAGAGCCTTCTATTTCAAGCTCTCGGTTTAAATGATGAACTGCAGCG
EST: CAGTGCCGATCTTATCAAGGTCGAGTCATGGACCTTGTTAGCAATACTGG TGATGAGAGCCTTCTATTTCAAGCTCTCGGTTTAAATGATGAACTGCAGCGEST: gi|396941515|gb|HO188724.1|HO188724
genomic: CAGTGCCGATCTTATCAAGGTCGAGTCATGGACCTTGTTAGCAATACTGGgtatgttcta ... tcctctgcagTGATGAGAGCCTTCTATTTCAAGCTCTCGGTTTAAATGATGAACTGCAGCG
EST: CAGTGCCGATCTTATCAAGGTCGAGTCATGGACCTTGTTAGCAATACTGG TGATGAGAGCCTTCTATTTCAGGCTCTCGGTTTAAATGATGAATTGCAGCG
genomic: CAGTGCCGATCTTATCAAGGTCGAGTCATGGACCTTGTTAGCAATACTGGgtatgttcta ... tcctctgcagTGATGAGAGCCTTCTATTTCAAGCTCTCGGTTTAAATGATGAACTGCAGCG
ggttccatgtccttttcacattgtcatgtgacatattgtcttgtatcctctgcagTGATGAGAGCCTTCTATTTCAAGCTCTCGGTTTAAATGATGAACTGCAGCGTGTTCTTCAGCGTCATGATGACATCGCAAAGGGAGTGCCTCCCGGTTCA
tatcctct CT-rich tract
acatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttctattcttttactctgaaattttggttccatgtccttttcacattgtcatgtgacatattgtcttgtatcctctgcagTGATGAGAGCCTTCTATTTCAAGCTCTCGGTTTAAATGATGAACTGCAGCGTGTTCTTCAGCGTCATGATGACATCGCAAAGGGAGTGCCTCCCGGTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG