1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aactaaattgttattccaagttatgaggcacaagctgtagacaatatgcacttttcatttaattacccgcacatgccaactcagtacggcccaattacagGTACCTGCTATACCTGATATAGCACAGAAGGAAATGAGGTTTCCTGAGCAAGCAAATCGTTCGACGGAGTTTGCTCATCATCCAAAGTTGCGAAAATTGG
species | Oryza sativa |
transcript | LOC_Os11g07490.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCCAGCGGGTATGCAACAACTACCATTGACTCATCCACATGTTCCCCAG GTACCTGCTATACCTGATATAGCACAGAAGGAAATGAGGTTTCCTGAGCAAEST: gi|38477773|gb|CF961906.1|CF961906
genomic: TGCCAGCGGGTATGCAACAACTACCATTGACTCATCCACATGTTCCCCAGgtatttttct ... ccaattacagGTACCTGCTATACCTGATATAGCACAGAAGGAAATGAGGTTTCCTGAGCAA
EST: TGCCAGCGGGTATGCAACAACTACCATTGACTCATCCACATGTTCCCCAG GTACCTGCTATACCTGATATAGCACAGAAGGAAATGAGGTTTCCTGAGCAAEST: gi|218484422|gb|FG955567.1|FG955567
genomic: TGCCAGCGGGTATGCAACAACTACCATTGACTCATCCACATGTTCCCCAGgtatttttct ... ccaattacagGTACCTGCTATACCTGATATAGCACAGAAGGAAATGAGGTTTCCTGAGCAA
EST: CAACAACTACCATTGACTCATCCACATGTTCCCCAG GTACCTGCTATACCTGATATAGCACAGAAGGAAATGAGGTTTCCTGAGCAAEST: gi|29665928|gb|CB662203.1|CB662203
genomic: CAACAACTACCATTGACTCATCCACATGTTCCCCAGgtatttttct ... ccaattacagGTACCTGCTATACCTGATATAGCACAGAAGGAAATGAGGTTTCCTGAGCAA
EST: TGCCAGCGGGTATGCAACAACTACCATTGACTCATCCACATGTTCCCCAG GTACCTGCTATACCTGATATAGCACAGAAGGAAATGAGGTTTCCTGAGCAA
genomic: TGCCAGCGGGTATGCAACAACTACCATTGACTCATCCACATGTTCCCCAGgtatttttct ... ccaattacagGTACCTGCTATACCTGATATAGCACAGAAGGAAATGAGGTTTCCTGAGCAA
atgcacttttcatttaattacccgcacatgccaactcagtacggcccaattacagGTACCTGCTATACCTGATATAGCACAGAAGGAAATGAGGTTTCCTGAGCAAGCAAATCGTTCGACGGAGTTTGCTCATCATCCAAAGTTGCGAAAATTGG
atttaat putative branch site (score: 5)
ttttcatttaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactaaattgttattccaagttatgaggcacaagctgtagacaatatgcacttttcatttaattacccgcacatgccaactcagtacggcccaattacagGTACCTGCTATACCTGATATAGCACAGAAGGAAATGAGGTTTCCTGAGCAAGCAAATCGTTCGACGGAGTTTGCTCATCATCCAAAGTTGCGAAAATTGG
aactaaa
- - - - - - - - - - - - gaggcac
- - - - - - - - - - - - - - - - -gctgtag
- - - - - - - - - - - - - - - - - - - - - -atatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acccgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgcca