1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagagcattgcataacatggtattaatgtctaccataaggaaatcatggctttattctgtcattgcctcatgaattaaacacatgtcaattgatttgcagGAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAGACCGAGCCATTAAGAGGCAAGAGCAGCAGCGGCAAGAGTGATGCCCCTGAAAATGAGA
species | Oryza sativa |
transcript | LOC_Os11g01740.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGACCAGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCTCAAGAG GAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAGACCGAGCCAEST: gi|15008978|gb|AU223366.1|AU223366
genomic: TGGACCAGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCTCAAGAGgtttgattcg ... tgatttgcagGAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAGACCGAGCCA
EST: TGGACCAGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCTCAAGAG GAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAAACCGAGCCAEST: gi|58031067|gb|CX728610.1|CX728610
genomic: TGGACCAGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCTCAAGAGgtttgattcg ... tgatttgcagGAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAGACCGAGCCA
EST: ATTCCTCAAGAG GAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAGACCGAGCCAEST: gi|89186565|gb|CI048237.1|CI048237
genomic: ATTCCTCAAGAGgtttgattcg ... tgatttgcagGAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAGACCGAGCCA
EST: TGGACCAGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCTCAAGAG GAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAGACCGAGCCAEST: gi|29624053|gb|CB629064.1|CB629064
genomic: TGGACCAGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCTCAAGAGgtttgattcg ... tgatttgcagGAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAGACCGAGCCA
EST: TGGACCAGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCTCAAGAG GAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAGACCGAGCCAEST: gi|88961525|gb|CI096806.1|CI096806
genomic: TGGACCAGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCTCAAGAGgtttgattcg ... tgatttgcagGAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAGACCGAGCCA
EST: AGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCTCAAGAG GAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAGACCGAGCCA
genomic: AGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCTCAAGAGgtttgattcg ... tgatttgcagGAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAGACCGAGCCA
atggctttattctgtcattgcctcatgaattaaacacatgtcaattgatttgcagGAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAGACCGAGCCATTAAGAGGCAAGAGCAGCAGCGGCAAGAGTGATGCCCCTGAAAATGAGA
aattgat putative branch site (score: 16)
atgaattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagagcattgcataacatggtattaatgtctaccataaggaaatcatggctttattctgtcattgcctcatgaattaaacacatgtcaattgatttgcagGAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAGACCGAGCCATTAAGAGGCAAGAGCAGCAGCGGCAAGAGTGATGCCCCTGAAAATGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - -cattgca
- - - - - - - - - - - - - - - -accataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatgt