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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtattttaagagttagtggacatcaattttataataagataggatatgtcttttcacagtaaagttaccttcccttcattacttcattacttggacagGTAAAAAGTTTTGGAACCTCTTTCACTTGCAACCAATGCGTGATCAAAAG

Basic information

species Oryza sativa
transcript LOC_Os11g01140.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g01140.4 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G001457_T02 (Zea mays), 3'ss of exon 7
ttgtattttaagagttagtggacatcaattttataataagataggatatgtcttttcacagtaaagttaccttcccttcattacttcattacttggacagGTAAAAAGTTTTGGAACCTCTTTCACTTGCAACCAATGCGTGATCAAAAG
 |   |  |   || ||| ||  |  ||| |    |||   |    | | |  |       |||| | |  || | |    |  |  || |||||   |||||| || || |||||||||||||||||||| || ||||||||||| |||
ctagttgcttgtagatagaggctactaatgtgcagatatctttatttctatggtaatgagttaaactgaaatttcttgtggttgtgtatcacttgagtagGTAAGAAATTCTGGAACCTCTTTCACTTGCAGCCTATGCGTGATCAGAAG

upper sequence: LOC_Os12g01140.4 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA12G07890.2 (Glycine max), 3'ss of exon 9
--ttgtattttaagagttagtggacatcaattttataataagatagg-atatgtcttttcacagtaaagttaccttcccttcattacttcattacttggacagGTAAAAAGTTTTGGAACCTCTTTCACTTGCAACCAATGCGTGATCAAAAG
  ||  || | | || |   |   |||   ||| | |  || ||    || |  |   |   ||  || |    || |    |||| |      |     ||||||||||||| |||||| | ||||| ||||| || ||||||||||| |||
gttttcatatcatgaatcc-ttttcatagttttcaaaggaaaatgactatttaacaacttgaagctaaatatggttgctaatattattctgc--ccaattcagGTAAAAAGTTCTGGAACTTGTTTCATTTGCAGCCTATGCGTGATCAGAAG

upper sequence: LOC_Os12g01140.4 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA13G40550.1 (Glycine max), 3'ss of exon 7
ttgtattttaagagttagtggacat-caattttataataagataggatatgtcttttc-acagtaaagttaccttcccttcattacttcattacttggac-agGTAAAAAGTTTTGGAACCTCTTTCACTTGCAACCAATGCGTGATCAAAAG
   | | |||      |  ||| ||  |  | | |||   ||      ||    || | |   | |    || | |  || |  | |||  |  |    | ||| || ||||| |||||||| ||||| |||||||| ||||||||||| |||
---tttcttagcgtacaaaggatatatagctatttaacgtgaagatcaataatgttgcgattattattccacttgctattgaagatttctctgttcaatccagGAAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgtcttttcacagtaaagttaccttcccttcattacttcattacttggacagGTAAAAAGTTTTGGAACCTCTTTCACTTGCAACCAATGCGTGATCAAAAG
                taaagtta  TA-rich tract