Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtccgaaaaattcagagcaacttcatactaaactgttgtccatctcatgtcattacagtttgcacctgactatagtatgcggttacctttgttttgcatactgtcctctatacaacatctataataatcttgtatgatctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATCAATGGCGCAAATGTCTGGAACTGGCCAGTATCATATGACAAGCTTGGTA

Basic information

species Oryza sativa
transcript LOC_Os10g41780.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G038487_T02 (Zea mays), 3'ss of exon 8
gtgagtccgaaaaattcagagcaacttcatactaaactgttgtccatct-catgtcattacagtttgcacc--tgactatagtatgcggttacctttgttttgcatactgtcctctatacaacatctataataatcttgtatgatctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATCAATGGCGCAAATGTCTGGAACTGGCCAGTATCATATGACAAGCTTGGTA
                                         |||  ||    ||  |    | ||| ||    | | | ||| |||||| |    ||| ||   | | ||| ||  | | |   ||||  ||  | |  |       || ||||||||||||| ||||| || || || || || || |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||  
-----------------------------------------gtcagtcaatgtgataaagtaatttacaggaattagtgtagaatgcggctggaattggttcagaaaatgttcttgacaaa---tctaatatcttttcatggtggtcttgtgcagGTCTTGAACGAGGACCTACGGCTTGTTCTTGGTCAGCAAGAACGGATGATCAATGGCGCCAACGTCTGGAACTGGCCGGTATCATATGACAAGCTCGGGG

upper sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G038487_T03 (Zea mays), 3'ss of exon 8
gtgagtccgaaaaattcagagcaacttcatactaaactgttgtccatctcatgtcattacagtttgcacctgactatagtatgcggttacctttgttttgcatactgtcctctatacaacatctataataatcttgtatgatctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATCAATGGCGCAAATGTCTGGAACTGGCCAGTATCATATGACAAGCTTGGTA
                                   |     ||| || | ||    | |      | |  | | | ||| |||||| |    ||| ||   | | ||| ||  | | |   ||||  ||  | |  |       || ||||||||||||| ||||| || || || || || || |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||  
---------------------------------gcatgtcagtcaatgtgataaagtaatttacaggaatt-agtgtagaatgcggctggaattggttcagaaaatgttcttgacaaa---tctaatatcttttcatggtggtcttgtgcagGTCTTGAACGAGGACCTACGGCTTGTTCTTGGTCAGCAAGAACGGATGATCAATGGCGCCAACGTCTGGAACTGGCCGGTATCATATGACAAGCTCGGGG

upper sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G082527_T01 (Zea mays), 3'ss of exon 2
gtgagtccgaaaaattcagagcaacttcatactaaactgttgtccatctcatgtcattacagtttgcacc--tgactatagtatgcggttacctttgttttgcatactgtcctctatacaacatctataataatcttgtatgatctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATCAATGGCGCAAATGTCTGGAACTGGCCAGTATCATATGACAAGCTTGGTA
                                                   ||  |    | |||  |    | | | ||| |||||  |    ||| ||   | | ||| ||  | | |   ||||  ||  | |  |       || ||||||||||||| ||||| || || || || || || |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||  
---------------------------------------------------tgataaagtaatttataggaattagtgtagaatgcgactggaattggttcagaaaatgttcttgacaaa---tctaatatcttttcatggtggtcttgtgcagGTCTTGAACGAGGACCTCCGGCTTGTTCTTGGTCAGCAAGAACGGATGATCAATGGCGCCAACGTCTGGAACTGGCCGGTATCATATGACAAGCTCGGGG

upper sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G082527_T02 (Zea mays), 3'ss of exon 3
gtgagtccgaaaaattcagagcaacttcatactaaactgttgtccatctcatgtcattacagtttgcacc--tgactatagtatgcggttacctttgttttgcatactgtcctctatacaacatctataataatcttgtatgatctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATCAATGGCGCAAATGTCTGGAACTGGCCAGTATCATATGACAAGCTTGGTA
                                                            | |||  |    | | | ||| |||||  |    ||| ||   | | ||| ||  | | |   ||||  ||  | |  |       || ||||||||||||| ||||| || || || || || || |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||  
----------------------------------------------------------gtaatttataggaattagtgtagaatgcgactggaattggttcagaaaatgttcttgacaaa---tctaatatcttttcatggtggtcttgtgcagGTCTTGAACGAGGACCTCCGGCTTGTTCTTGGTCAGCAAGAACGGATGATCAATGGCGCCAACGTCTGGAACTGGCCGGTATCATATGACAAGCTCGGGG

upper sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G020309_T01 (Zea mays), 3'ss of exon 2
gtgagtccgaaaaattcagagcaacttcatactaaactgttgtccatctcatgtcattacagtttgcacctgactatagtatgcggttacctttgttttgcatactgtcctctatacaacatctataataatcttgtatgatctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATCAATGGCGCAAATGTCTGGAACTGGCCAGTATCATATGACAAGCTTGGTA
                                   ||    ||| || | ||    | |    | | |  | | | ||| |||||| |    ||| ||   | | ||| ||  | | |   ||||  ||  | |  |       || ||||||||||||||||||| || || || || || || |||||||||||||||||||||||||| || |||| ||||||||| ||||||||||||||||| ||  
---------------------------------gcacgtcagtcaatgtgataaagtaatttataggaatt-agtgtagaatgcggctggaattggttcagaaaatgttcttgacaaa---tctaatatcttttcatggtggtcttgtgcagGTCTTGAATGAGGACCTCCGGCTTGTTCTTGGTCAGCAAGAACGGATGATCAATGGCGCCAACGTCTAGAACTGGCCGGTATCATATGACAAGCTCGGGG

upper sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G171390_T04 (Zea mays), 3'ss of exon 7
gtgagtccgaaaaattcagagcaacttcatactaaactgttgtccatctcatgtcattacagtttgcacctgactatagtatgcggttacctttgttttgcatactgtcctctatacaacatctataataatcttgtatgatctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATCAATGGCGCAAATGTCTGGAACTGGCCAGTATCATATGACAAGCTTGGTA
                                                    |  | |  || |||   ||      | |     |  |||    | ||||  |   ||     || | |||  ||  |     ||| ||  ||    |||||| ||||| ||||| || || ||||| || || ||||||||  |||||||| | ||||| || |||||||||||||| || || || ||||| || || |
----------------------------------------------------gcgagtctagcttgtctcttgtccaactgaaacgaaaccgac-tcttgctcaaaatc-----tagaccatgcatggtg---ctgtgtgtgctg--cgcagGTGTTGAACGAGGACCTACGGCTCGTTCTTGGCCAGCAAGAGGGGATGATCGACGGCGCCAACGTCTGGAACTGGCCGGTGTCGTACGACAAACTCGGGA

upper sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G038487_T01 (Zea mays), 3'ss of exon 8
gtgagtccgaaaaattcagagcaacttcatactaaactgttgtccatctcatgtcattacagtttgcacc--tgactatagtatgcggttacctttgttttgcatactgtcctctatacaacatctataataatcttgtatgatctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATCAATGGCGCAAATGTCTGGAACTGGCCAGTATCATATGACAAGCTTGGTA
                                                            | ||| ||    | | | ||| |||||| |    ||| ||   | | ||| ||  | | |   ||||  ||  | |  |       || ||||||||||||| ||||| || || || || || || |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||  
----------------------------------------------------------gtaatttacaggaattagtgtagaatgcggctggaattggttcagaaaatgttcttgacaaa---tctaatatcttttcatggtggtcttgtgcagGTCTTGAACGAGGACCTACGGCTTGTTCTTGGTCAGCAAGAACGGATGATCAATGGCGCCAACGTCTGGAACTGGCCGGTATCATATGACAAGCTCGGGG

upper sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA06G11920.1 (Glycine max), 3'ss of exon 8
gtgagtccgaaaaattcagagcaacttcatactaaactgttgtccatctcatgtcattacagtttgcacctgactatagtatgcggttacctttgttttgcatactgtcctctatacaacatctataataatcttgtatgatctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATCAATGGCGCAAATGTCTGGAACTGGCCAGTATCATATGACAAGCTTGGTA
                                              |  |||||      ||| || |  |||||  |  |      |||| |    ||   |  |  | | | ||     | | |     |  ||| ||| |||  |  |||| || || |||||||| || || ||| | || |||||||| ||||||| ||| || |||||||| ||||| |  |||||||| ||||||||||||||  
------------------------------------------ggattaacatgtagagtgagtgtgaa--tgactgaaagagaatactaccatctccttat-ttttaacatttttattttgtgtgt-----tgctgt-tga-cttattaaagGTTTTAAACGAGGATCTACGGCTAGTGTTAGGCCAGCAAGAGCGGATGAACAACGGTGCAAATGTGTGGAATTTCCCAGTATCCTATGACAAGCTTGGGG

upper sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA04G42840.1 (Glycine max), 3'ss of exon 8
gtgagtccgaaaaattcagagcaacttcatactaaactgttgtccatctcatgtcattacagtttgcacctgactatagtatgcggttacctttgttttgcatactgtcctctatacaacatctataataatcttgtatgatctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATCAATGGCGCAAATGTCTGGAACTGGCCAGTATCATATGACAAGCTTGGTA
                                       | |   |   |||||     |||| || |  |||||  |  |      |||| |    ||  ||  |  | | | |      | | |     |  ||| ||| |||  |  |||| || || |||||||| || || ||| | || |||||||| ||||||| |||||| || ||||| ||||| |  |||||||| |||||||||||||| |
---------------------------------------tggattaa--catgtagagtcagtgtgaa--tgactgaaagagaatactaccgtatcctt--attttaacatttttgttttgtgtgt-----tgctgt-tga-cttattaaagGTTTTAAACGAGGATCTACGGCTAGTGTTAGGCCAGCAAGAGCGGATGAACAATGGTGCCAATGTGTGGAATTTCCCAGTATCCTATGACAAGCTTGGGA

upper sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 8
lower sequence: Vv18s0001g02700.t01 (Vitis vinifera), 3'ss of exon 7
--------gtgagtccgaaaaattcagagcaacttcatactaaactgttgtccatctcatgtcattacagtttgcacctgactatagtatgcggttacctttgttttgcatactgtcc-tctatacaacatctataataatcttgtatgatctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATCAATGGCGCAAATGTCTGGAACTGGCCAGTATCATATGACAAGCTTGGTA
              ||   || |||      |   |||| ||   ||  ||  |   |      ||   || |   | | ||| | ||     |  |  |    |   |   || ||  |||  ||||  |||  |       ||| |||| ||| | ||||| |||||||||||||| || || || || || || ||||| |||||| | |  || |||||||| |||||||| |||||||||||||||||||||||  
gtaaaatctccttcccactaatttcctcaagatgacatagtagcatgaagtttaaggcgctctgttcttgtatctgcattactctggttaaatgccatatgctatccaccctctctctatctgcacaatttcttga-------tgtgtgattttttt-cagGTGTTGAATGAGGATCTACGGCTTGTACTTGGACAACAAGACCGGATGCTGATGGGGGCAAATGTGTGGAACTGCCCAGTATCATATGACAAGCTTGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23512851|gb|BU672866.1|BU672866
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
EST: gi|38471414|gb|CF955545.1|CF955545
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
EST: gi|29613350|gb|CB618363.1|CB618363
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
EST: gi|29613420|gb|CB618433.1|CB618433
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
EST: gi|29671153|gb|CB667428.1|CB667428
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
EST: gi|29617557|gb|CB622569.1|CB622569
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
EST: gi|29628271|gb|CB633282.1|CB633282
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
EST: gi|38481220|gb|CF965309.1|CF965309
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
EST: gi|29614577|gb|CB619590.1|CB619590
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
EST: gi|29671986|gb|CB668261.1|CB668261
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
EST: gi|38472205|gb|CF956336.1|CF956336
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
EST: gi|29617758|gb|CB622770.1|CB622770
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
EST: gi|29671152|gb|CB667427.1|CB667427
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
EST: gi|29613260|gb|CB618273.1|CB618273
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
EST: gi|29618943|gb|CB623955.1|CB623955
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
EST: gi|29616567|gb|CB621579.1|CB621579
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
EST: gi|29672905|gb|CB669180.1|CB669180
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTCTTGAATGAGGATCTTCGACTCGTGTTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
EST: gi|29687020|gb|CB683295.1|CB683295
EST:     TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAG                         GTTTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC
genomic: TCAAGCATGTCCCTTTCATGCATATACTATGGTCACATTTTGCTGAGAAGgtgagtccga ... ctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcatactgtcctctatacaacatctataataatcttgtatgatctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATCAATGGCGCAAATGTCTGGAACTGGCCAGTATCATATGACAAGCTTGGTA
                                            tctttctgc  CT-rich tract
                          tataataatcttgtat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtccgaaaaattcagagcaacttcatactaaactgttgtccatctcatgtcattacagtttgcacctgactatagtatgcggttacctttgttttgcatactgtcctctatacaacatctataataatcttgtatgatctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATCAATGGCGCAAATGTCTGGAACTGGCCAGTATCATATGACAAGCTTGGTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT