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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaaatgacatggcgcaacttgatgttttttagcatatggttatacaactcgcaagcaaaaacgcatgatttttaccttttttgaacagTTCCATCACAATTTTGTGCATCCTTCATGTGATCCTAAAGGCCAATGGAGCCACTGTAAGTCGGATCCTGGTGCATGCAGTACATCCCAAATTGCGACTC

Basic information

species Oryza sativa
transcript LOC_Os10g40290.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g40290.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G117999_T01 (Zea mays), 3'ss of exon 8
gtaaaaaaatgacatggcgcaacttg-atgttttttagcatatggttatacaactcgcaagcaaaaacgcatgatttttaccttttttgaacagTTCCATCACAATTTTGTGCATCCTTCATGTGATCCTAAAGGCCAATGGAGCCACTGTAAGTCGGATCCTGGTGCATGCAGTACATCCCAAATTGCGACTC
|||||     |     |  | |   | ||  ||||  |||  ||    |     | | ||| || ||  |  |  |||  |  |||| | ||||||||| |||| | | ||||  ||||| | |||||||  |||||| ||||||| ||| |||||||||||||||| |||||   || | || || || || |
gtaaactgcggcttgtgatcgatcagtatagttttcggcacctgaacct---ggtggtaagtaataattctgg--tttggcaattttcggacagTTCCACCACATTCTGGTGCCGCCTTCGTCTGATCCTGGAGGCCATTGGAGCCGCTGCAAGTCGGATCCTGGTGGATGCAACGCAACACAGATCGCAACCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatggttatacaactcgcaagcaaaaacgcatgatttttaccttttttgaacagTTCCATCACAATTTTGTGCATCCTTCATGTGATCCTAAAGGCCAATGGAGCCACTGTAAGTCGGATCCTGGTGCATGCAGTACATCCCAAATTGCGACTC
                                   tttttacctttttt  CT-rich tract
                                  atttttacctttttt  TA-rich tract