1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tggcgtggaaaggttgcatctcctaaacacatgatgctatttgtgaatgcatctccttttataccattataccattttcaattgttcttctccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
species | Oryza sativa |
transcript | LOC_Os10g40030.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|88277301|gb|CI398103.1|CI398103
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|29656761|gb|CB653036.1|CB653036
genomic: TTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|88475803|gb|CI413074.1|CI413074
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|86842409|gb|CI335295.1|CI335295
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|86835581|gb|CI348038.1|CI348038
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|88465137|gb|CI517306.1|CI517306
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: GAACTGGACTATGGCTAATG CTGTGGTGGACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|86864259|gb|CI334058.1|CI334058
genomic: GAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|88531802|gb|CI460315.1|CI460315
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGGTAATG CTGTGGTGAACACCATTGGAAGAATGGTATGTAAAACTGTAGAACAGEST: gi|88506009|gb|CI433515.1|CI433515
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|38477927|gb|CF962060.1|CF962060
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TCCCGGTTTTGTTGGAACCAACCTGTTCAAGAACTGGACTATGGCTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|3764142|gb|AU030642.1|AU030642
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|88280407|gb|CI401605.1|CI401605
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TCCCGGTTTTGTTGGAACCCACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|88277245|gb|CI398047.1|CI398047
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATN CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|86832996|gb|CI333595.1|CI333595
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGT-AACACCATT-GAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|88462690|gb|CI517219.1|CI517219
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: CAAGAACTGGACTATGGGTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|86870124|gb|CI318040.1|CI318040
genomic: CAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: ACTGGACTATGGCTAATG CTGTGGTGAACACCAGTTGNAAAAATCGTATGTAAAACTGTAGAACAGEST: gi|88478793|gb|CI416064.1|CI416064
genomic: ACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCA-TTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|88525522|gb|CI452377.1|CI452377
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|88286185|gb|CI522485.1|CI522485
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|86863517|gb|CI345235.1|CI345235
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|86865757|gb|CI335450.1|CI335450
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TCCCCGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|86841577|gb|CI336520.1|CI336520
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: CCCGGTTTTGTTGG-ACCAACCTATTCAAGAACTGGACTAGTGGGTAATC CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAAGCTGTAGAACAGEST: gi|86598223|gb|CI354840.1|CI354840
genomic: CCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTA-TGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAA-CTGTAGAACAG
EST: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAGEST: gi|88277264|gb|CI398066.1|CI398066
genomic: TCCCGGTTTTGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
EST: TGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATG CTGTGGTGGACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
genomic: TGTTGGAACCAACCTATTCAAGAACTGGACTATGGCTAATGgtaatcccta ... tccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
aatgcatctccttttataccattataccattttcaattgttcttctccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
ttgttcttctccatt CT-rich tract
ttttataccattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggcgtggaaaggttgcatctcctaaacacatgatgctatttgtgaatgcatctccttttataccattataccattttcaattgttcttctccattacagCTGTGGTGAACACCATTGGAAGAATCGTATGTAAAACTGTAGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA