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gtaattacgaaccctgatattctatattaccaaatgtcatgctttgagaatttgaaatgcagcacttaatgaatagacagtggccaattgtttatgttgcctatgcatttaattattgattttatttagCATATAGGTTATGGTGGTACCAAGTTTGCAGTGAAGTTGCATATTTCCAAGTGGCTCCAAAAAATGATAGTGTCCGTTCTGCAAAGATTGACACAAG
species | Oryza sativa |
transcript | LOC_Os10g36760.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATATGATCAAGAATATTTGAAGAACACAACTCCACCTCCTGCTGAATCTG CATATAGGTNTATGGTGGTACCAAGTTTGCAGTGAAGTTGCATATTTCCAAEST: gi|33796295|gb|CF324015.1|CF324015
genomic: ATATGATCAAGAATATTTGAAGAACACAACTCCACCTCCTGCTGAATCTGgtaattacga ... ttttatttagCATATAGGT-TATGGTGGTACCAAGTTTGCAGTGAAGTTGCATATTTCCAA
EST: ATATGATCAAGAATATTTGAAGAACACAACTCCACCTCCTGCTGAATCTG CATATAGGNTTATGGTGGTACCAAGTTTGCAGTGAAGTTGCATATTTCCAAEST: gi|3768110|gb|AU032137.1|AU032137
genomic: ATATGATCAAGAATATTTGAAGAACACAACTCCACCTCCTGCTGAATCTGgtaattacga ... ttttatttagCATATAGG-TTATGGTGGTACCAAGTTTGCAGTGAAGTTGCATATTTCCAA
EST: ATATGATCAAGAATATTTGAAGAACACAACTCCACCTCCTGCTGAATCTG CATATAGGNTTATGGTGGTACCAAGTTTGCAGTGAAGTTGCATATTTCCAAEST: gi|33801565|gb|CF326654.1|CF326654
genomic: ATATGATCAAGAATATTTGAAGAACACAACTCCACCTCCTGCTGAATCTGgtaattacga ... ttttatttagCATATAGG-TTATGGTGGTACCAAGTTTGCAGTGAAGTTGCATATTTCCAA
EST: ATATGATCAAGAATATTTGAAGAACACAACTCCACCTCCTGCTGAATCTG CATATAGGTTATGGTGGTACCAAGTTTGCAGTGAAGTTGCATATTTCCAAGEST: gi|163918133|gb|EG713999.1|EG713999
genomic: ATATGATCAAGAATATTTGAAGAACACAACTCCACCTCCTGCTGAATCTGgtaattacga ... ttttatttagCATATAGGTTATGGTGGTACCAAGTTTGCAGTGAAGTTGCATATTTCCAAG
EST: ATATGATCAAGAATATTTGAAGAACACAACTCCACCTCCTGCTGAATCTG ------G-TTATGGTGGTACCAAGTTTGCAGTGAAGTTGCATATTTCCAAGEST: gi|33796974|gb|CF324350.1|CF324350
genomic: ATATGATCAAGAATATTTGAAGAACACAACTCCACCTCCTGCTGAATCTGgtaattacga ... ttttatttagCATATAGGTTATGGTGGTACCAAGTTTGCAGTGAAGTTGCATATTTCCAAG
EST: ATATGATCAAGAATATTTGAAGAACACAACTCCACCTCCTGCTGAATCTG CATATAGGTTATGGGTGGTACCAAGTTTGCAAGTGAAGTTGCATATTTCCA
genomic: ATATGATCAAGAATATTTGAAGAACACAACTCCACCTCCTGCTGAATCTGgtaattacga ... ttttatttagCATATAGGTTATGG-TGGTACCAAGTTTGCA-GTGAAGTTGCATATTTCCA
agacagtggccaattgtttatgttgcctatgcatttaattattgattttatttagCATATAGGTTATGGTGGTACCAAGTTTGCAGTGAAGTTGCATATTTCCAAGTGGCTCCAAAAAATGATAGTGTCCGTTCTGCAAAGATTGACACAAG
tattgat putative branch site (score: 39)
ttttattt CT-rich tract
tatgcatttaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattacgaaccctgatattctatattaccaaatgtcatgctttgagaatttgaaatgcagcacttaatgaatagacagtggccaattgtttatgttgcctatgcatttaattattgattttatttagCATATAGGTTATGGTGGTACCAAGTTTGCAGTGAAGTTGCATATTTCCAAGTGGCTCCAAAAAATGATAGTGTCCGTTCTGCAAAGATTGACACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG