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gtattttgattgcctgactagctattctgtgtcttttagcatggattattgccttcccaacttcatattattgtttgttgcgcttgtcatatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAAGGTCGACCCCTCTCTGATTTTACTAAGCAGAAGATAGTTGTGGTGGGAG
species | Oryza sativa |
transcript | LOC_Os10g35960.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTCTTCAGAGGTATCGTAACCGATTTTGTATGTTCAATGATGACGTGCAG GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTEST: gi|58673493|gb|CK062179.1|CK062179
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTT
EST: CTCTTCAGAGGTATCGTAACCGATTTTGTATGTTCAATGATGACGTGCAG GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAAEST: gi|58665242|gb|CK053928.1|CK053928
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: CTCTTCAGAGGTATCGTAACCGATTTTGTATGTTCAATGATGACGTGCAG GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAAEST: gi|58694574|gb|CK083261.1|CK083261
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: CTCTTCAGAGGTATCGTAACCGATTTTGTATGTTCAATGATGACGTGCAG GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAAEST: gi|58659006|gb|CK047686.1|CK047686
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: CTCTTCAGAGGTATCGTAACCGATTTTGTATGTTCAATGATGACGTGCAG GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAAEST: gi|29664101|gb|CB660376.1|CB660376
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAG GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAAEST: gi|29624067|gb|CB629078.1|CB629078
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAG GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAAEST: gi|29656255|gb|CB652530.1|CB652530
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAG GGGACAGCANGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGEST: gi|29687359|gb|CB683634.1|CB683634
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTG
EST: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAG GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAAEST: gi|58604291|gb|CK014819.1|CK014819
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: CTCTTCAGAGGTATCGTAACCGATTTTGTATGTTCAATGATGACGTGCAG GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAAEST: gi|29624065|gb|CB629076.1|CB629076
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAG GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAAEST: gi|29678813|gb|CB675088.1|CB675088
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAG GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
attattgccttcccaacttcatattattgtttgttgcgcttgtcatatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAAGGTCGACCCCTCTCTGATTTTACTAAGCAGAAGATAGTTGTGGTGGGAG
ttcatattattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttgattgcctgactagctattctgtgtcttttagcatggattattgccttcccaacttcatattattgtttgttgcgcttgtcatatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAAGGTCGACCCCTCTCTGATTTTACTAAGCAGAAGATAGTTGTGGTGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG