1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tccattgaaattctgaattctgactacattgcggtttactaaagttttgttccaacatattgttacaatcataatgattgatatattcttgtgttgacagAGAGGTTGCTAGCAGCAAATAACCCTGGTTCTCAGAAGAATAGGCCACACACTATGTTTGCAAGTGGCCCGCCTACGCAAGGGCTTGCAAATGGTGCACC
species | Oryza sativa |
transcript | LOC_Os10g31900.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTATGCCTACAAGAAAGACACAAAAGGAGAACGCCATGGCACACCTGCAG AGAGGTTGCTAGCAGCAAATAACCCTGGTTCTCAGAAGAATAGGCCACACAEST: gi|218492162|gb|FG955700.1|FG955700
genomic: TTATGCCTACAAGAAAGACACAAAAGGAGAACGCCATGGCACACCTGCAGgtattgtgtt ... gtgttgacagAGAGGTTGCTAGCAGCAAATAACCCTGGTTCTCAGAAGAATAGGCCACACA
EST: TTATGCCTACAAGAAAGACACAAAAGGAGAACGCCATGGCACACCTGCAG AGAGGTTGCTAGCAGCAAATAACCCTGGTTCTCAGAAGAATAGGCCACACAEST: gi|58678587|gb|CK067274.1|CK067274
genomic: TTATGCCTACAAGAAAGACACAAAAGGAGAACGCCATGGCACACCTGCAGgtattgtgtt ... gtgttgacagAGAGGTTGCTAGCAGCAAATAACCCTGGTTCTCAGAAGAATAGGCCACACA
EST: TTATGCCTACAAGAAAGACACAAAAGGAGAACGCCATGGCACACCTGCAG AGAGGTTGCTAGCAGCAAATAACCCTGGTTCTCAGAAGAATAGGCCACACAEST: gi|218490390|gb|FG958429.1|FG958429
genomic: TTATGCCTACAAGAAAGACACAAAAGGAGAACGCCATGGCACACCTGCAGgtattgtgtt ... gtgttgacagAGAGGTTGCTAGCAGCAAATAACCCTGGTTCTCAGAAGAATAGGCCACACA
EST: TTATGCCTACAAGAAAGACACAAAAGGAGAACGCCATGGCACACCTGCAG AGAGGTTGCTAGCAGCAAATAACCCTGGTTCTCAGAAGAATAGGCCACACAEST: gi|218480525|gb|FG956905.1|FG956905
genomic: TTATGCCTACAAGAAAGACACAAAAGGAGAACGCCATGGCACACCTGCAGgtattgtgtt ... gtgttgacagAGAGGTTGCTAGCAGCAAATAACCCTGGTTCTCAGAAGAATAGGCCACACA
EST: TTATGCCTACAAGAAAGACACAAAAGGAGAACGCCATGGCACACCTGCAG AGAGGTTGCTAGCAGCAAATAACCCTGGTTCTCAGAAGAATAGGCCACACA
genomic: TTATGCCTACAAGAAAGACACAAAAGGAGAACGCCATGGCACACCTGCAGgtattgtgtt ... gtgttgacagAGAGGTTGCTAGCAGCAAATAACCCTGGTTCTCAGAAGAATAGGCCACACA
tttgttccaacatattgttacaatcataatgattgatatattcttgtgttgacagAGAGGTTGCTAGCAGCAAATAACCCTGGTTCTCAGAAGAATAGGCCACACACTATGTTTGCAAGTGGCCCGCCTACGCAAGGGCTTGCAAATGGTGCACC
gattgat putative branch site (score: 21)
ttcttgt putative PPT
aatcataatgattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccattgaaattctgaattctgactacattgcggtttactaaagttttgttccaacatattgttacaatcataatgattgatatattcttgtgttgacagAGAGGTTGCTAGCAGCAAATAACCCTGGTTCTCAGAAGAATAGGCCACACACTATGTTTGCAAGTGGCCCGCCTACGCAAGGGCTTGCAAATGGTGCACC
- - - - -attctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgattg