1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgtgtttttttttcattttaatttaagttttgtttttcttttgactaatgatactttttttttctgccagtgtggtgttgcgccttgccttagtctaatgccctttattggttattgcagTTATCGAGGTGGAGTTGACAGTGAAGGACGCCCGGTTATGGTTGTTGTTGGTGCACACTTTCTTCTTCGCTGCTTGGATCTTGAACGGTTTGTTCTACAT
species | Oryza sativa |
transcript | LOC_Os10g30750.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTAAAGCAAATTCTCTTAATCTTTCCAGAGATTGCTGAAATGAAAATAAT TTATCGAGGTGGAGTTGACAGTGAAGGACGCCCGGTTATGGTTGTTGTTGGEST: gi|58600810|gb|CK011338.1|CK011338
genomic: CTAAAGCAAATTCTCTTAATCTTT-CAGAGATTGCTGAAATGAAAATAATgtatgtgttt ... gttattgcagTTATCGAGGTGGAGTTGACAGTGAAGGACGCCCGGTTATGGTTGTTGTTGG
EST: GCTAAAGCAAATTCTCTTAATCTTTCAGAGATTGCTGAAATGAAAATAAT TTATCGAGGTGGAGTTGACAGTGAAGGACGCCCGGTTATGGTTGTTGTTGGEST: gi|33800827|gb|CF326285.1|CF326285
genomic: GCTAAAGCAAATTCTCTTAATCTTTCAGAGATTGCTGAAATGAAAATAATgtatgtgttt ... gttattgcagTTATCGAGGTGGAGTTGACAGTGAAGGACGCCCGGTTATGGTTGTTGTTGG
EST: GCTAAAGCAAATTCTCTTAATCTTTCAGAGATTGCTGAAATGAAAATAAT TTATCGAGGTGGAGTTGACAGTGAAGGACGCCCGGTTATGGTTGTTGTTGGEST: gi|218487094|gb|FG954412.1|FG954412
genomic: GCTAAAGCAAATTCTCTTAATCTTTCAGAGATTGCTGAAATGAAAATAATgtatgtgttt ... gttattgcagTTATCGAGGTGGAGTTGACAGTGAAGGACGCCCGGTTATGGTTGTTGTTGG
EST: GCTAAAGCAAATTCTCTTAATCTTTCAGAGATTGCTGAAATGAAAATAAT TTATCGAGGTGGAGTTGACAGTGAAGGACGCCCGGTTATGGTTGTTGTTGG
genomic: GCTAAAGCAAATTCTCTTAATCTTTCAGAGATTGCTGAAATGAAAATAATgtatgtgttt ... gttattgcagTTATCGAGGTGGAGTTGACAGTGAAGGACGCCCGGTTATGGTTGTTGTTGG
gccagtgtggtgttgcgccttgccttagtctaatgccctttattggttattgcagTTATCGAGGTGGAGTTGACAGTGAAGGACGCCCGGTTATGGTTGTTGTTGGTGCACACTTTCTTCTTCGCTGCTTGGATCTTGAACGGTTTGTTCTACAT
gtctaat putative branch site (score: 33)
tttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgtttttttttcattttaatttaagttttgtttttcttttgactaatgatactttttttttctgccagtgtggtgttgcgccttgccttagtctaatgccctttattggttattgcagTTATCGAGGTGGAGTTGACAGTGAAGGACGCCCGGTTATGGTTGTTGTTGGTGCACACTTTCTTCTTCGCTGCTTGGATCTTGAACGGTTTGTTCTACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT