1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgtaacttgtattcatttctacttatggagtatactattctctgtgcattacacttaactgatccctttcagGATGTGAGTGCGTCTCTGTCAAAAAAATATCCGAAGCTTTACCAGGAAGGAATCAGGAATACATTCTTCAAGTGGAGGGTGATAGCAGTGTGGGCTTTCT
species | Oryza sativa |
transcript | LOC_Os10g27220.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGTCATTTTCACGGCCCTACCTGTAATTATGGTTGGATTGTTTGATAAG GATGTGAGTGCGTCTCTGTCEST: gi|58660414|gb|CK049094.1|CK049094
genomic: ATGTCATTTTCACGGCCCTACCTGTAATTATGGTTGGATTGTTTGATAAGgtatgtaact ... tccctttcagGATGTGAGTGCGTCTCTGTC
EST: ATGTCATTTTCACGGCCCTACCTGTAATTATGGTTGGATTGTTTGATAAG GATGTGAGTGCGTCTCTGTCNNNNNNNTATCCGAAGCTTTACCAGGAAGGA
genomic: ATGTCATTTTCACGGCCCTACCTGTAATTATGGTTGGATTGTTTGATAAGgtatgtaact ... tccctttcagGATGTGAGTGCGTCTCTGTCAAAAAAATATCCGAAGCTTTACCAGGAAGGA
tctacttatggagtatactattctctgtgcattacacttaactgatccctttcagGATGTGAGTGCGTCTCTGTCAAAAAAATATCCGAAGCTTTACCAGGAAGGAATCAGGAATACATTCTTCAAGTGGAGGGTGATAGCAGTGTGGGCTTTCT
aactgat putative branch site (score: 13)
tccctttc CT-rich tract
tatactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaacttgtattcatttctacttatggagtatactattctctgtgcattacacttaactgatccctttcagGATGTGAGTGCGTCTCTGTCAAAAAAATATCCGAAGCTTTACCAGGAAGGAATCAGGAATACATTCTTCAAGTGGAGGGTGATAGCAGTGTGGGCTTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG